Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

The official python wrapper for the pylon Camera Software Suite

NMA deep learning course

Tools for processing 2P recordings

interactive analysis of calcium imaging data from larval zebrafish

original FaceMap code which writes a binary file of movie before processing (good for compressed movies, otherwise slow).

cell detection in calcium imaging recordings

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

NMA Computational Neuroscience course

A technical report on convolution arithmetic in the context of deep learning

Please go to https://github.com/CRBS/cdeep3m2 for most recent version

Intel® Nervana™ reference deep learning framework committed to best performance on all hardware

volumetric reconstruction of 3D cellular-resolution imaging data

Flood-Filling Networks for instance segmentation in 3d volumes.

Data backend for fast proofreading of cell segmentations in connectomics datasets

Dask tutorial

A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)

Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

Simple and flexible progress bar for Jupyter Notebook and console

PyTorch implementations of Generative Adversarial Networks.

A Deep Learning based project for colorizing and restoring old images (and video!)

The fastai deep learning library

fast.ai Courses

Cython bindings for fpzip, a floating point image compression algorithm.

compressed_segmentation for Neuroglancer volumes. This is the PyPI package fork.

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

Read and write Neuroglancer datasets programmatically.