A command line tool to perform local DIAMOND searches against the BacMet database.
Just type in
git clone https://github.com/bhattlab/BacMetSearch.git
cd BacMetSearch
pip install .
That's it, you are ready to go!
If you want to search a single isolate genome, type:
bacmetsearch isolate <myIsolate.fna>
If you want to perform a metagenomic search, use:
bacmetsearch meta <myMetagenome.fna>
This program is unpublished and has not been peer-reviewed. If you wish to cite the program, please submit an issue and we will help you.