Increase memory for correctReads.

binlu1981 · Oct 14, 2017 · 36a3c50 · 36a3c50
1 parent 66b5c29
commit 36a3c50
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/pipelines/canu/CorrectReads.pm b/src/pipelines/canu/CorrectReads.pm
@@ -162,7 +162,7 @@ sub estimateMemoryNeededForCorrectionJobs ($) {
  open(F, "< $path/$asm.readsToCorrect.stats") or caExit("can't open '$path/$asm.readsToCorrect.stats' for reading: $!", undef);
  while (<F>) {
  if (m/Maximum\s+Memory\s+(\d+)/) {
- $memEst = int($1 / 1073741824.0 + 0.5) * 2;
+ $memEst = int(4 * $1 / 1073741824.0 + 0.5);
  }
  }
  close(F);