Updating ATAC-seq code

binlu1981 · Feb 2, 2018 · ccc1193 · ccc1193
1 parent 95fcbbf
commit ccc1193
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Showing 20 changed files with 1 addition and 509 deletions.
diff --git a/analysis/atac/ATAC_permutation_enrichment_MarchApril.R b/analysis/atac/ATAC_permutation_enrichment_MarchApril.R
diff --git a/...is/atac/Nov2017/ForGithub_bestPractice.sh → analysis/atac/ForGithub_bestPractice.sh b/...is/atac/Nov2017/ForGithub_bestPractice.sh → analysis/atac/ForGithub_bestPractice.sh
diff --git a/analysis/atac/Gat.sh b/analysis/atac/Gat.sh
diff --git a/analysis/atac/Nov2017/Gat_100k.sh → analysis/atac/Gat_100k.sh b/analysis/atac/Nov2017/Gat_100k.sh → analysis/atac/Gat_100k.sh
diff --git a/analysis/atac/March_Peak_trueIntersectWo_editor.py b/analysis/atac/March_Peak_trueIntersectWo_editor.py
diff --git a/analysis/atac/Nov2017/NGmerge_20.sh → analysis/atac/NGmerge_20.sh b/analysis/atac/Nov2017/NGmerge_20.sh → analysis/atac/NGmerge_20.sh
diff --git a/analysis/atac/Nov2017/bowtie2_X2000.sh b/analysis/atac/Nov2017/bowtie2_X2000.sh
diff --git a/analysis/atac/Nov2017/readme.txt b/analysis/atac/Nov2017/readme.txt
diff --git a/analysis/atac/Nov2017/bedgraph2BW.sh → analysis/atac/bedgraph2BW.sh b/analysis/atac/Nov2017/bedgraph2BW.sh → analysis/atac/bedgraph2BW.sh
diff --git a/...v2017/c_indy_macs_bdg_p05_dupsRetained.sh → .../atac/c_indy_macs_bdg_p05_dupsRetained.sh b/...v2017/c_indy_macs_bdg_p05_dupsRetained.sh → .../atac/c_indy_macs_bdg_p05_dupsRetained.sh
diff --git a/analysis/atac/c_p05_macs2_bdg.sh b/analysis/atac/c_p05_macs2_bdg.sh
diff --git a/...v2017/c_pool_macs_bdg_q05_dupsRetained.sh → .../atac/c_pool_macs_bdg_q05_dupsRetained.sh b/...v2017/c_pool_macs_bdg_q05_dupsRetained.sh → .../atac/c_pool_macs_bdg_q05_dupsRetained.sh