This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publication in Nature Machine Intelligence (Soenksen LR, Ma Y, Zeng …

Multi-modal single cell analysis pipelines

Tutorials for learning scverse

Writing reviews of academic papers

A python port of the R package SCTransform:

A curated and summarized list of bioinformatics bench-marking papers and resources.

Udacity's Deep Learning Nano Foundation program.

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

How to get started with the single cell batches comparison

Markdown Cheatsheet for Github Readme.md

Simple simulation of single-cell RNA sequencing data

Table of software for the analysis of single-cell RNA-seq data.

Vignette for Single-Cell workshop at Festival of Genomics California 2016

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data