Skip to content

Issues: biocommons/bioutils

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
2 Open 35 Closed
2 Open 35 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Move remaining setup.cfg elements to pyproject.toml enhancement New feature or request
#71 by jsstevenson was closed Sep 23, 2024
1
Work done to support the human mitochondrial codon table in main, but missing from latest release 0.5.8.post1 bug Something isn't working
#67 by bsgiles73 was closed Sep 11, 2024
5
build broken closed-by-stale stale
#56 by andreasprlic was closed Mar 24, 2024
2
Add GRCh38p13 and GRCh38p14
#54 by davmlaw was closed Jul 10, 2023
1
synchronize biocommons.example with bioutils
#50 by reece was closed May 9, 2023
@reece
bioutils.normalize.normalize performance degrades for large sequences
#47 by theferrit32 was closed May 8, 2023
3
Tests do not run when package is freshly installed
#46 by theferrit32 was closed May 8, 2023
3
Add T2T-CHM13v2.0
#45 by davmlaw was closed Jul 10, 2023
1
release latest main branch
#42 by andreasprlic was closed Jun 10, 2022
2
seqfetcher doesn't support Ensembl transcript versions
#40 by davmlaw was closed May 23, 2022
1
Fix testing warnings
#38 by reece was closed May 7, 2022
1
@reece
Add support for selenoproteins
#36 by andreasprlic was closed May 4, 2022
(PTC-W0019) Consider using literal syntax to create the data structure won't fix This will not be worked on
#35 by reece was closed Jul 21, 2021
1
(PYL-W0102) Dangerous default argument won't fix This will not be worked on
#34 by reece was closed Jul 21, 2021
1
Improve support for degenerate codons
#31 by reece was closed May 5, 2021
1
Support degenerate codons in translate table
#29 by reece was closed Apr 14, 2021
1
wheel build fails
#26 by marty-brandon-nih was closed Jul 31, 2019
2
revert vmc_digest back to truncated_digest won't fix This will not be worked on
#24 by reece was closed Nov 7, 2020
6
Add pypi project description won't fix This will not be worked on
#23 by reece was closed Nov 6, 2019
3
Write/improve documentation won't fix This will not be worked on
#22 by reece was closed Oct 18, 2019
9 tasks
2
Implement refget digest format
#20 by reece was closed May 16, 2019
@reece
Remove support for Python 2.7
#19 by reece was closed May 28, 2019
Implement flexible sequence normalization won't fix This will not be worked on
#18 by reece was closed Dec 17, 2019
@reece
5
Release last 2.7 version with pinned dependencies
#17 by reece was closed May 13, 2019
1
seqfetcher: Retry after rate limit error
#16 by reece was closed Apr 5, 2019
ProTip! Add no:assignee to see everything that’s not assigned.