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adding threshold to the read_count_threshold README
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antgonza committed May 18, 2022
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -10,7 +10,7 @@ Installation assumes a working QIIME 2 environment with a minimum version of 202
git clone https://github.com/biocore/q2-katharoseq.git
cd q2-katharoseq
pip install -e .
```
```

## Use

Expand All @@ -24,6 +24,7 @@ classification, and the [`q2-taxa`](https://docs.qiime2.org/2021.11/plugins/avai
```
qiime katharoseq read_count_threshold \
--i-table a_genus_level_table.qza \
--p-threshold 80 \
--p-control classic \
--p-positive-control-value name_of_controls_in_metadata \
--m-positive-control-column-file your_metadata.tsv \
Expand All @@ -32,4 +33,3 @@ qiime katharoseq read_count_threshold \
--m-cell-count-column-column cell_count_variable_in_metadata \
--o-visualization result.qzv
```

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