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removing whitespace
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wasade committed Feb 22, 2022
1 parent e9617c4 commit 8e81411
Showing 1 changed file with 0 additions and 7 deletions.
7 changes: 0 additions & 7 deletions q2_katharoseq/tests/test_method.py
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,6 @@
class KatharoSeqTestCase(TestCase):

def setUp(self):

self.output_dir = '.'
self.positive_control_value = 'a'
ind = pd.Index(['s1', 's2', 's3', 's4'],
Expand Down Expand Up @@ -55,7 +54,6 @@ def setUp(self):
self.threshold = 50

def test_outputs_index(self):

with tempfile.TemporaryDirectory() as output_dir:
read_count_threshold(
output_dir,
Expand All @@ -70,7 +68,6 @@ def test_outputs_index(self):
self.assertTrue(os.path.exists(index_fp))

def test_invalid_threshold(self):

with tempfile.TemporaryDirectory() as output_dir, \
self.assertRaisesRegex(
ValueError,
Expand Down Expand Up @@ -102,7 +99,6 @@ def test_invalid_threshold(self):
self.control)

def test_no_positive_controls_in_col(self):

ind = pd.Index(['s1', 's2', 's3', 's4'],
name='sampleid')
positive_control_column = pd.Series(
Expand All @@ -128,7 +124,6 @@ def test_no_positive_controls_in_col(self):
self.control)

def test_no_positive_controls_in_table(self):

ind = pd.Index(
['s5', 's6', 's7', 's8'],
name='sampleid')
Expand Down Expand Up @@ -156,15 +151,13 @@ def test_no_positive_controls_in_table(self):
self.control)

def test_sigmoid(self):

x = 1
h = 2
k_prime = 3
a = allosteric_sigmoid(x, h, k_prime)
self.assertTrue(a == .25)

def test_threshold(self):

r1 = 2
r2 = 3
thresh = 50
Expand Down

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