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wasade committed Feb 22, 2022
1 parent 8285524 commit 93c0f26
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions q2_katharoseq/_methods.py
Original file line number Diff line number Diff line change
Expand Up @@ -134,8 +134,8 @@ def read_count_threshold(

# FIND THRESHOLD
min_freq = get_threshold(katharo['log_asv_reads'],
katharo['correct_assign'],
threshold/100)
katharo['correct_assign'],
threshold/100)

# VISUALIZER
max_input_html = q2templates.df_to_html(max_inputT.to_frame())
Expand Down Expand Up @@ -168,8 +168,8 @@ def estimating_biomass(
positive_control_column == positive_control_value]
positive_controls = filtered.loc[positive_controls.index]

positive_controls['control_cell_extraction'] = control_cell_extraction.to_series().loc[
positive_controls.index]
positive_controls['control_cell_extraction'] = \
control_cell_extraction.to_series().loc[positive_controls.index]
positive_controls['log_control_cell_extraction'] = \
positive_controls.control_cell_extraction.apply(math.log10)

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