🧿
Focusing
Bioinformatics, data science, cell therapy, immuno-oncology
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Bristol Myers Squibb
- Seattle
- https://www.linkedin.com/in/bkutlu
- @burak_kutlu_
Pinned Loading
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awesome-single-cell
awesome-single-cell PublicForked from seandavi/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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deeplearning-biology
deeplearning-biology PublicForked from hussius/deeplearning-biology
A list of deep learning implementations in biology
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leafcutter
leafcutter PublicForked from davidaknowles/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
R
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polygenic-risk-scores
polygenic-risk-scores PublicForked from pgormley/polygenic-risk-scores
Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.
Shell 1
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Prepare a table annotations for huma...
Prepare a table annotations for human genes using Bioconductor 1# I am sure this can be done in a multiple of ways: but here's a nice example of use of Reduce for merging lists
2# This particular use case if when you are trying to make a look up table for Human genes
3# Check out Marc Carlson's Annotationdbi packages and tutorials for alternative ways (SQL) of retrieving the information
4# Caution note:
5# the unintended consequence of joining on the Entrez Gene ids is the Ensembl ids for alternative ids are lost and usually the
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Convert+xgmml+file+to+igraph+object....
Convert+xgmml+file+to+igraph+object.ipynb 1{
2"cells": [
3{
4"cell_type": "markdown",
5"metadata": {},
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