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@bowang-lab

WangLab @ U of T

BoWang's Lab at University of Toronto

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  1. MedSAM MedSAM Public

    Segment Anything in Medical Images

    Jupyter Notebook 3.1k 428

  2. scGPT scGPT Public

    Jupyter Notebook 1.1k 220

  3. U-Mamba U-Mamba Public

    U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation

    Python 719 71

  4. Graph-Mamba Graph-Mamba Public

    Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State Spaces

    Python 252 30

  5. MedSAMSlicer MedSAMSlicer Public

    3D Slicer Plugin for Segment anything in medical images

    Python 183 23

  6. ECG-FM ECG-FM Public

    An electrocardiogram analysis foundation model.

    Jupyter Notebook 103 4

Repositories

Showing 10 of 46 repositories
  • MedSAMSlicer Public

    3D Slicer Plugin for Segment anything in medical images

    bowang-lab/MedSAMSlicer’s past year of commit activity
    Python 183 23 2 1 Updated Dec 25, 2024
  • IntegrAO Public

    Integrate Any Omics: Towards genome-wide data integration for patient stratification

    bowang-lab/IntegrAO’s past year of commit activity
    Jupyter Notebook 6 MIT 3 0 0 Updated Dec 19, 2024
  • MorphoDiff Public

    This is the official repository of MorphoDiff, a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions based on perturbation encoding.

    bowang-lab/MorphoDiff’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 1 0 0 Updated Dec 19, 2024
  • PANORAMA Public
    bowang-lab/PANORAMA’s past year of commit activity
    1 0 0 0 Updated Dec 10, 2024
  • AGILE Public

    AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery

    bowang-lab/AGILE’s past year of commit activity
    Python 28 MIT 4 1 0 Updated Dec 4, 2024
  • csc413-2024 Public
    bowang-lab/csc413-2024’s past year of commit activity
    Jupyter Notebook 1 MIT 2 0 0 Updated Nov 22, 2024
  • ECG-FM Public

    An electrocardiogram analysis foundation model.

    bowang-lab/ECG-FM’s past year of commit activity
    Jupyter Notebook 103 MIT 4 1 0 Updated Nov 13, 2024
  • Orthrus Public

    Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.

    bowang-lab/Orthrus’s past year of commit activity
    Python 46 MIT 6 2 0 Updated Oct 29, 2024
  • OCAT Public
    bowang-lab/OCAT’s past year of commit activity
    Python 17 GPL-3.0 3 2 0 Updated Oct 22, 2024
  • BLEEP Public

    Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning

    bowang-lab/BLEEP’s past year of commit activity
    Python 70 Apache-2.0 11 1 0 Updated Oct 22, 2024
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