update index.rst

brainpy · Dec 31, 2021 · 6d48730 · 6d48730
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diff --git a/cann/index.rst b/cann/index.rst
@@ -0,0 +1,4 @@
+.. toctree::
+   :maxdepth: 1
+
+   Wu_2008_CANN.ipynb
diff --git a/decision_making/index.rst b/decision_making/index.rst
@@ -0,0 +1,6 @@
+.. toctree::
+   :maxdepth: 1
+
+   Wang_2002_decision_making_spiking.ipynb
+   Wang_2006_decision_making_rate.ipynb
+
diff --git a/dynamics_analysis/index.rst b/dynamics_analysis/index.rst
@@ -0,0 +1,11 @@
+.. toctree::
+   :maxdepth: 1
+
+   1d_simple_systems.ipynb
+   2d_decision_making_model.ipynb
+   ../decision_making/Wang_2006_decision_making_rate.ipynb
+   2d_NaK_model.ipynb
+   3d_hindmarsh_rose_model.ipynb
+   highdim_CANN.ipynb
+   highdim_gj_coupled_fhn.ipynb
+   ../recurrent_networks/Yang_2020_RNN_Analysis.ipynb
diff --git a/ei_nets/index.rst b/ei_nets/index.rst
@@ -0,0 +1,8 @@
+.. toctree::
+   :maxdepth: 1
+
+   Vreeswijk_1996_EI_net.ipynb
+   Brette_2007_COBA.ipynb
+   Brette_2007_CUBA.ipynb
+   Brette_2007_COBAHH.ipynb
+   Tian_2020_EI_net_for_fast_response.ipynb
diff --git a/gj_nets/index.rst b/gj_nets/index.rst
@@ -0,0 +1,4 @@
+.. toctree::
+   :maxdepth: 1
+
+    Sherman_1992_gj_antisynchrony.ipynb
diff --git a/index.rst b/index.rst
@@ -10,56 +10,46 @@ to implement various neuron models or network models.
    :maxdepth: 1
    :caption: Neuron Models
 
-   neurons/Izhikevich_2003_Izhikevich_model.ipynb
-   neurons/Romain_2004_LIF_phase_locking.ipynb
-   neurons/Gerstner_2005_AdExIF_model.ipynb
-   neurons/Niebur_2009_GIF.ipynb
+   neurons/index.rst
 
 
 .. toctree::
     :maxdepth: 1
     :caption: Continuous-attractor Network
 
-    cann/Wu_2008_CANN.ipynb
+    cann/index.rst
 
 
 
 .. toctree::
    :maxdepth: 1
    :caption: Decision Making Model
 
-   decision_making/Wang_2002_decision_making_spiking.ipynb
-   decision_making/Wang_2006_decision_making_rate.ipynb
+   decision_making/index.rst
 
 
 
 .. toctree::
    :maxdepth: 1
    :caption: E/I Balanced Network
 
-   ei_nets/Vreeswijk_1996_EI_net.ipynb
-   ei_nets/Brette_2007_COBA.ipynb
-   ei_nets/Brette_2007_CUBA.ipynb
-   ei_nets/Brette_2007_COBAHH.ipynb
-   ei_nets/Tian_2020_EI_net_for_fast_response.ipynb
+   ei_nets/index.rst
 
 
 
 .. toctree::
     :maxdepth: 1
     :caption: Gap Junction Network
 
-    gj_nets/Sherman_1992_gj_antisynchrony.ipynb
+    gj_nets/index.rst
 
 
 
 .. toctree::
    :maxdepth: 1
    :caption: Oscillation and Synchronization
 
-   oscillation_synchronization/Wang_1996_gamma_oscillation.ipynb
-   oscillation_synchronization/Brunel_Hakim_1999_fast_oscillation.ipynb
-   oscillation_synchronization/Diesmann_1999_synfire_chains.ipynb
+   oscillation_synchronization/index.rst
 
 
 .. toctree::
@@ -71,39 +61,22 @@ to implement various neuron models or network models.
    :maxdepth: 1
    :caption: Recurrent Neural Network
 
-   recurrent_networks/Sussillo_Abbott_2009_FORCE_Learning.ipynb
-   recurrent_networks/Laje_Buonomano_2013_robust_timing_rnn.ipynb
-   recurrent_networks/integrator_rnn.ipynb
-   recurrent_networks/ParametricWorkingMemory.ipynb
-   recurrent_networks/Song_2016_EI_RNN.ipynb
-   recurrent_networks/Masse_2019_STP_RNN.ipynb
-   recurrent_networks/Yang_2020_RNN_Analysis.ipynb
+   recurrent_networks/index.rst
 
 
 
 .. toctree::
    :maxdepth: 1
    :caption: Working Memory Model
 
-   working_memory/Mi_2017_working_memory_capacity.ipynb
-   working_memory/Bouchacourt_2019_Flexible_working_memory.ipynb
-   ../recurrent_networks/Masse_2019_STP_RNN.ipynb
-
+   working_memory/index.rst
 
 
 .. toctree::
    :maxdepth: 1
    :caption: Dynamics Analysis
 
-   dynamics_analysis/1d_simple_systems.ipynb
-   dynamics_analysis/2d_decision_making_model.ipynb
-   ../decision_making/Wang_2006_decision_making_rate.ipynb
-   dynamics_analysis/2d_fitzhugh_nagumo_model.ipynb
-   dynamics_analysis/2d_NaK_model.ipynb
-   dynamics_analysis/3d_hindmarsh_rose_model.ipynb
-   dynamics_analysis/highdim_CANN.ipynb
-   dynamics_analysis/highdim_gj_coupled_fhn.ipynb
-   ../recurrent_networks/Yang_2020_RNN_Analysis.ipynb
+   dynamics_analysis/index.rst
 
 
 

diff --git a/neurons/index.rst b/neurons/index.rst
@@ -0,0 +1,7 @@
+.. toctree::
+   :maxdepth: 1
+
+   Izhikevich_2003_Izhikevich_model.ipynb
+   Romain_2004_LIF_phase_locking.ipynb
+   Gerstner_2005_AdExIF_model.ipynb
+   Niebur_2009_GIF.ipynb
diff --git a/oscillation_synchronization/index.rst b/oscillation_synchronization/index.rst
@@ -0,0 +1,6 @@
+.. toctree::
+   :maxdepth: 1
+
+   Wang_1996_gamma_oscillation.ipynb
+   Brunel_Hakim_1999_fast_oscillation.ipynb
+   Diesmann_1999_synfire_chains.ipynb
diff --git a/recurrent_networks/index.rst b/recurrent_networks/index.rst
@@ -0,0 +1,10 @@
+.. toctree::
+   :maxdepth: 1
+
+   Sussillo_Abbott_2009_FORCE_Learning.ipynb
+   Laje_Buonomano_2013_robust_timing_rnn.ipynb
+   integrator_rnn.ipynb
+   ParametricWorkingMemory.ipynb
+   Song_2016_EI_RNN.ipynb
+   Masse_2019_STP_RNN.ipynb
+   Yang_2020_RNN_Analysis.ipynb
diff --git a/working_memory/index.rst b/working_memory/index.rst
@@ -0,0 +1,6 @@
+.. toctree::
+    :maxdepth: 1
+
+    Bouchacourt_2019_Flexible_working_memory.ipynb
+    Mi_2017_working_memory_capacity.ipynb
+    ../recurrent_networks/Masse_2019_STP_RNN.ipynb