bredeson
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assannphy Public
Assembly, Annotation, and Phylogenetics of bacterial genomes
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pfb2024 Public
Forked from prog4biol/pfb2024Programming for Biology @ CSHL 2024
Python UpdatedOct 25, 2024 -
DBG2OLC Public
Forked from yechengxi/DBG2OLCThe genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS seq…
C++ GNU General Public License v3.0 UpdatedOct 18, 2024 -
pfb2023 Public
Forked from prog4biol/pfb2023Programming for Biology @ CSHL 2023
Python UpdatedOct 30, 2023 -
EIG Public
Forked from DReichLab/EIGEigen tools by Nick Patterson and Alkes Price lab
C Other UpdatedJul 31, 2023 -
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pfb2022 Public
Forked from prog4biol/pfb2022Programming for Biology Class @ CSHL 2022
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Dioscorea-alata-genomics Public
Code and data from the Bredeson, Lyons, et al. Dioscorea alata var. TDa95/00328 v2 genome and analysis manuscript.
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merqury Public archive
Forked from marbl/merquryk-mer based assembly evaluation
Shell UpdatedMar 24, 2020 -
pfb2019 Public
Forked from prog4biol/pfb2019Programming for Biology 2019
Python UpdatedOct 30, 2019 -
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PFB2018-final-project Public
Protein evolution and annotation project
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STARalign Public
Pipeline to align RNA-seq reads to a genome using STAR with splice junctions
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PFB2012 Public
Forked from srobb1/PFB2012Code and samples from lecture and review sessions
Perl UpdatedOct 15, 2012