Skip to content

Issues: broadinstitute/PhylogicNDT

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

35 Open 7 Closed
35 Open 7 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Relative timing for subregion (chr3q13.33 instead of chr3q)
#72 opened Aug 21, 2024 by oghzzang
how to understand the result of com.tsv
#70 opened Dec 14, 2023 by Elizabeth237
1
input of SinglePatientTiming
#69 opened Dec 1, 2023 by Elizabeth237
2
tuple index out of range
#68 opened Nov 23, 2023 by kangdong318
About SinglePatientTiming demo
#67 opened Oct 24, 2023 by RetGiraffe11235
2
Retrieve the segment info of CNVs from the output
#65 opened Sep 7, 2023 by lichennan123
2
Protein_Change and Variant_Classification are None
#64 opened Mar 16, 2023 by lincj1994
2
Docker build fails
#63 opened Jan 13, 2023 by emsisson
Is the CorrectBias module undefined?
#62 opened Jun 15, 2022 by moshl
1
Bad clustering with combines 0 CCF and 1 CCF mutations
#61 opened May 29, 2022 by SebastianHollizeck
Protein_change and Protein_Change are inconformity in different scripts.
#60 opened Apr 30, 2022 by YingYa
More than one tree was generated in Phylogic Results
#59 opened Apr 4, 2022 by angelacho0113
Warnings with example data
#58 opened Mar 29, 2022 by rpensch
1
What citation should be used for PhylogicNDT?
#56 opened Feb 13, 2022 by bknisbac
SinglePatientTiming: get_arm_level_cn_events
#55 opened Oct 22, 2021 by iS4i4S
5
--order_by_timepoint not working
#54 opened Oct 8, 2021 by abenjak
Allele-specific copy number from PhylogicNDT or ABSOLUTE
#53 opened May 24, 2021 by juberpatel
2
CCF of child cluster greater than parents
#52 opened Jan 26, 2021 by nadia35
1
cluster 1 with clust_ccf_mean equal 1 was the clonal cluster ?
#51 opened Jan 6, 2021 by smm19900210
1
"IndexError: list index out of range" in plot_1d_clusters
#50 opened Oct 18, 2020 by SebastianHollizeck
2
specifying output folder for singularity
#49 opened Sep 23, 2020 by SebastianHollizeck
3
buildtree not showing private mutations
#47 opened Aug 29, 2020 by vicentepp
Running cluster step on hypermutated tumour mutations
#46 opened Aug 28, 2020 by bkinnersley
PureCN implementation of ABSOLUTE as input for phylogicNDT
#45 opened Aug 20, 2020 by naumenko-sa
1
Log output destination configurable?
#40 opened May 27, 2020 by csmith-pact
ProTip! Mix and match filters to narrow down what you’re looking for.