This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.

Efficient evolution from protein language models

Various Ideas for Protein Masked LM with ESMFold/ESM-2

This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant effects".

Llama3、Llama3.1 中文仓库（随书籍撰写中... 各种网友及厂商微调、魔改版本有趣权重 & 训练、推理、评测、部署教程视频 & 文档）

GPT4All: Run Local LLMs on Any Device. Open-source and available for commercial use.

A generative model for programmable protein design

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

Python package for analysis of antibody heavy and light chains

Code for the antibody deep learning paper.

Analysis of antibody NGS data

✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody se…

Code for running RFdiffusion

Making large AI models cheaper, faster and more accessible

Making Protein folding accessible to all!

Making Protein Design accessible to all via Google Colab!

List of papers about Proteins Design using Deep Learning

protein docking stuff

Code for the ProteinMPNN paper

A rosetta pipeline to position important protein sidechains with sub-angstrom accuracy.