bunop
Follow
Stars
CLI tool to generate terraform files from existing infrastructure (reverse Terraform). Infrastructure to Code
Conda recipes for the bioconda channel.
A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.
🪐 ✨ Jupyter AI Agents are agents equipped with tools like 'execute', 'insert_cell', and more, to transform your Jupyter Notebooks into an intelligent, interactive workspace!
Rmd source files for the HarvardX series PH525x
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
High-quality circular representations of taxonomic and phylogenetic trees
Nanopore demultiplexing, QC and alignment pipeline
Lectures and exercises for the 2024 Pangenome Summer in Piacenza
Hacky Python scripts for downloading your Twitter likes & converting to HTML. Note: I used this once and have no intention of updating it or spending any more seconds thinking about Twitter. Good l…
Best practices and workflow for genome annotation
Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!
Learn how to design, develop, deploy and iterate on production-grade ML applications.
A curated list of awesome Machine Learning frameworks, libraries and software.
🏅 Collection of Kaggle Solutions and Ideas 🏅
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials,…
a nextflow pipeline for creating a pangenome with minigraph-cactus
Pipeline to infer tree sequences with different datasets
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platf…
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive upd…
strip output from Jupyter and IPython notebooks
Contains files for the deep learning in genomics primer.
A logical, reasonably standardized, but flexible project structure for MLops.