Master

CERR_core/Contouring/BABS/processAndImportSeg.m

@@ -65,10 +65,10 @@
 success = 1;
 
 % Get list of auto-segmented structures
-AIoutputPath = fullfile(fullSessionPath,'AIoutput');
+AIoutputPath = fullfile(fullSessionPath,'outputLabelMap');
 if ischar(userOptS.output.labelMap.strNameToLabelMap)
-    labelDatS = readDLConfigFile(fullfile(AIoutputPath,...
-        userOptS.strNameToLabelMap));
+    labelDatS = jsondecode(filread(fullfile(AIoutputPath,...
+        userOptS.output.labelMap.strNameToLabelMap)));
     labelMapS = labelDatS.strNameToLabelMap;
 else
     labelMapS = userOptS.output.labelMap.strNameToLabelMap;

CERR_core/ModelImplementationLibrary/SegmentationModels/ModelConfigurations/3DMRCT_BrainMets_VNet_config.json

@@ -1,6 +1,4 @@
 {
-"strNameToLabelMap": "userDefinedStrLabelMap.json",
-
 "register": {
                     "baseScan":{"identifier":{"imageType":"CT SCAN"}},
                     "movingScan":{"identifier":{"imageType":"MR SCAN"}},
@@ -56,6 +54,10 @@
 
 "batchSize" : 1,
 
+"output":{   
+    "labelMap":{"strNameToLabelMap": "userDefinedStrLabelMap.json"}
+},
+
 "outputAssocScan": {"identifier" : {"imageType": "CT SCAN"}},
 
 "roiGenerationDescription": "Brain Mets Candidates - AI generated",