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@chasewnelson

Chase W. Nelson 倪誠志

Research Fellow at NCI-NIH | Visiting Scientist at AMNH | Bioinformatics, cancer, molecular evolution, overlapping genes, population genetics, viruses

Popular repositories Loading

  1. SNPGenie SNPGenie Public

    Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

    Perl 110 37

  2. Taiwan-COVID-19 Taiwan-COVID-19 Public

    Analysis and visualization of Taiwan’s COVID-19 data

    R 28 4

  3. OLGenie OLGenie Public

    Program for estimating dN/dS in overlapping genes (OLGs)

    Perl 13 2

  4. EBT EBT Public

    Evolutionary Bioinformatics Toolkit (EBT)

    Perl 11 4

  5. trevolver trevolver Public

    Program for simulating non-reversible DNA sequence evolution on a fixed bifurcating tree using trinucleotide context

    Perl 9 1

  6. SARS-CoV-2-ORF3d SARS-CoV-2-ORF3d Public

    Supplementary scripts for Nelson et al. (2020) paper on ORF3d

    R 5 4

Repositories

Showing 9 of 9 repositories
  • Soni-response Public

    Scripts, analysis code, input data, and intermediate files for response to Soni et al.

    chasewnelson/Soni-response’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Apr 20, 2024
  • Taiwan-COVID-19 Public

    Analysis and visualization of Taiwan’s COVID-19 data

    chasewnelson/Taiwan-COVID-19’s past year of commit activity
    R 28 GPL-3.0 4 0 0 Updated Nov 24, 2023
  • SNPGenie Public

    Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

    chasewnelson/SNPGenie’s past year of commit activity
    Perl 110 GPL-3.0 37 28 0 Updated Aug 21, 2023
  • OLGenie Public

    Program for estimating dN/dS in overlapping genes (OLGs)

    chasewnelson/OLGenie’s past year of commit activity
    Perl 13 GPL-3.0 2 2 0 Updated Dec 2, 2022
  • HPV16-molecular-evolution Public

    Supplementary material for study of HPV16 molecular evolution

    chasewnelson/HPV16-molecular-evolution’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 13, 2022
  • VCFgenie Public

    Program for reproducibly filtering VCF files and eliminating false positive variants

    chasewnelson/VCFgenie’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Aug 25, 2022
  • SARS-CoV-2-ORF3d Public

    Supplementary scripts for Nelson et al. (2020) paper on ORF3d

    chasewnelson/SARS-CoV-2-ORF3d’s past year of commit activity
    R 5 GPL-3.0 4 0 0 Updated Nov 5, 2020
  • trevolver Public

    Program for simulating non-reversible DNA sequence evolution on a fixed bifurcating tree using trinucleotide context

    chasewnelson/trevolver’s past year of commit activity
    Perl 9 GPL-3.0 1 0 0 Updated Sep 19, 2020
  • EBT Public

    Evolutionary Bioinformatics Toolkit (EBT)

    chasewnelson/EBT’s past year of commit activity
    Perl 11 GPL-3.0 4 1 0 Updated Jul 14, 2020

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