Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

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Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk

This repository contains the python package for Helical

A Fast, Adaptive, Stable, and Transferable Topic Model (NeurIPS 2024)

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Papers of Neural Topic Models (NTMs)

Repository for MolFormer

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TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems

TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems