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Commits on Mar 29, 2021

• Fix metadata of LINCS 2020 CMap dataset

  clemenshug

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  e4d26fe

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Commits on Mar 19, 2021

• Wrangle new LINCS 2020 CMap data

  clemenshug

  committed
  1282c37

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• Add missing time for experiments, use qs

  clemenshug

  committed
  efa4c53

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Commits on Sep 9, 2020

• Include replicates in DGE datasets. Rewrangle deseq input to take into account replicates

  clemenshug

  committed
  d5ad360

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Commits on May 12, 2020

• Re-wrangle CMap data to new SMS version including comparison of masses

  clemenshug

  committed
  91a8de5

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Commits on May 1, 2020

• Rewrangle DGE data using new lspci_ids and fix some lscpi_id drug name mappings by manually editing their names

  clemenshug

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Commits on Apr 1, 2020

• Bulk

  clemenshug

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  b120017

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Commits on Feb 27, 2020

• Add bulk CDK4/6 wrangling

  clemenshug

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Commits on Feb 18, 2020

• Use new lspci_id compound name map

  clemenshug

  committed
  4e4837d

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Commits on Feb 4, 2020

• Add lspci_id to CMAP data

  clemenshug

  committed
  9d02311

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Commits on Jan 30, 2020

• Add batch information

  clemenshug

  committed
  dbd0aa8

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Commits on Jan 28, 2020

• Add lspci ID to cmap metadata

  clemenshug

  committed
  77a7222

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Commits on Jan 27, 2020

• Add drug repurposing datasets

  clemenshug

  committed
  d28066f

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Commits on Jan 25, 2020

• Add wrangled CMap data to synapse

  clemenshug

  committed
  e85c2a0

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Commits on Jan 24, 2020

• Add script for wrangling all DGE data together

  clemenshug

  committed
  b033fe3

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Commits on Jan 14, 2020

• Add count stats to old CDK DGE data

  clemenshug

  committed
  fae8b81

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• Add read counting stats to new CDK data wrangling

  clemenshug

  committed
  830caf5

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Commits on Jan 13, 2020

• Add wrangling of fresh CDK inhibitor data set

  clemenshug

  committed
  d6599cb

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Commits on Jul 1, 2019

• Fix problem with multiple P11 barcodes in DUB data wrangling

  clemenshug

  committed
  394bacc

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• Wrangling dub dataset

  clemenshug

  committed
  7e1c917

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Commits on Jun 30, 2019

• Standardize format of preprocessed datasets (Metadata and counts tables)

  clemenshug

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  dca1a28

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Commits on Jun 21, 2019

• Add preprocessing of AD repurposing drug data

  clemenshug

  committed
  00f93c3

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• Redo CDK dataset pre-processing to standardize format with other datasets

  clemenshug

  committed
  69bec93

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Commits on Apr 15, 2019

• Upload CDK count data to synapse

  clemenshug

  committed
  9598e27

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Commits on Mar 20, 2019

• Wrangle CMap metadata

  clemenshug

  committed
  3139bbb

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Commits on Mar 15, 2019

• Added analysis where each drug treatment is individually compared to control

  clemenshug

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  7d34f43

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Commits on Mar 12, 2019

• Initital commit of DGE vs RNA-seq comparison

  clemenshug

  committed
  420a88b

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