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mcmicro: Multiple-choice microscopy pipeline

Funding: This work is supported by the following:

  • NIH grant 1U54CA225088: Systems Pharmacology of Therapeutic and Adverse Responses to Immune Checkpoint and Small Molecule Drugs
  • NCI grant 1U2CCA233262: Pre-cancer atlases of cutaneous and hematologic origin (PATCH Center)
  • NCI grant 1U2CCA233280: Omic and Multidimensional Spatial Atlas of Metastatic Breast and Prostate Cancers
  • Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation

Instructions: https://labsyspharm.github.io/mcmicro/

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Multiple-choice microscopy pipeline

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  • Nextflow 97.3%
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