- a golang package for phylogenomics
- all the alignment utilites combined with a http server in a single genome scale package.
- This single application bring together all the functions i coded previously in a single package. By tomorrow, i will compile the final package for the release
- All single package will be still available from my github repository and this complete package will be available from GO packages.
https://github.com/codecreatede/golang-reference-alignment-estimate
https://github.com/codecreatede/golang-alignment-block-genotyper-eDNA
https://github.com/codecreatede/goroutines-phylogenomics-filter
https://github.com/codecreatede/golang-alignment-block-getter
https://github.com/codecreatede/go-alignment-estimate
https://github.com/codecreatede/go-phylogenomics-tab
https://github.com/codecreatede/goroutines-alignment-merger
https://github.com/codecreatede/go-alignment-block-estimate
https://github.com/codecreatede/go-alignment-proportion - it deals with the complete phylogenomics and perfom all the work of the phylogenomics
- from alignment to the merging, filtering and generating the bootstrap phylogenomes.
➜ alignmentGO git:(main) ✗ go run main.go
This is a complete alignmentGo package for the phylogenomics and whole genome alignment
Usage:
flags [command]
Available Commands:
completion Generate the autocompletion script for the specified shell
estimate
help Help about any command
merge
unified
Flags:
-h, --help help for flags
Use "flags [command] --help" for more information about a command.
➜ alignmentGO git:(main) ✗ go run main.go estimate -h
This estimates the site by site alignment estimates across the alignment and it takes the first genome as a reference for the estimation of the site variablitiy
Usage:
flags estimate [flags]
Flags:
-h, --help help for estimate
-a, --title string alignment file for the estimate (default "alignment file")
➜ alignmentGO git:(main) ✗ go run main.go merge -h
This merges all the alignment and gives the alignment ID header you have specified
Usage:
flags merge [flags]
Flags:
-A, --alignmentfile string a alignment file (default "align")
-h, --help help for merge
-T, --title string alignment title (default "title for the alignment")
➜ alignmentGO git:(main) ✗ go run main.go unified -h
This estimates the site proportion in your whole genome or gene specific alignment
Usage:
flags unified [flags]
Flags:
-a, --alignmentfile string a alignment file (default "align")
-h, --help help for unified
Gaurav Sablok