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Greiff Lab – Computational Systems Immunology

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  1. Absolut Absolut Public

    Unconstrained lattice antibody-antigen bindings generator

    Jupyter Notebook 102 20

  2. manuscript_insilico_antibody_generation manuscript_insilico_antibody_generation Public

    R 23 7

  3. developability_profiling developability_profiling Public

    Jupyter Notebook 19 2

  4. manuscript_progress_challenges_on-demand_antibody manuscript_progress_challenges_on-demand_antibody Public

    Jupyter Notebook 5 1

  5. mwds_calculator mwds_calculator Public

    Artificial Bee Colony - Estimation of Distribution Algorithm (ABC-EDA) is an algorithm to compute minimum weight dominating sets of undirected weighted networks. Adapted from Singh's and Shetgaonka…

    Python 3

  6. negative-class-optimization negative-class-optimization Public

    Jupyter Notebook 2

Repositories

Showing 10 of 17 repositories
  • embedairr Public

    Tool to extract sequence representations from protein language models

    csi-greifflab/embedairr’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Jan 17, 2025
  • developability_profiling Public
    csi-greifflab/developability_profiling’s past year of commit activity
    Jupyter Notebook 19 2 3 0 Updated Jan 6, 2025
  • negative-class-optimization Public
    csi-greifflab/negative-class-optimization’s past year of commit activity
    Jupyter Notebook 2 AGPL-3.0 0 0 0 Updated Jan 5, 2025
  • T1D-TCR Public

    This repository contains the source code and associated resources developed for the research paper titled “Identification of a type 1 diabetes-associated T cell receptor repertoire signature from the human peripheral blood”. The code primarily focuses on analyzing TCR repertoire associated with Type 1 Diabetes.

    csi-greifflab/T1D-TCR’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 15, 2024
  • Systematic-benchmarking-of-mass-spectrometry-based-antibody-sequencing-reveals-methodological-biases Public
    csi-greifflab/Systematic-benchmarking-of-mass-spectrometry-based-antibody-sequencing-reveals-methodological-biases’s past year of commit activity
    R 0 0 0 0 Updated Nov 26, 2024
  • airrtm Public
    csi-greifflab/airrtm’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jul 17, 2024
  • airrtm_data Public
    csi-greifflab/airrtm_data’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jul 16, 2024
  • Absolut Public

    Unconstrained lattice antibody-antigen bindings generator

    csi-greifflab/Absolut’s past year of commit activity
    Jupyter Notebook 102 20 7 0 Updated Jul 1, 2024
  • Preexisting-immunity-influenza-mice Public

    Code, figures, and processed data for the manuscript

    csi-greifflab/Preexisting-immunity-influenza-mice’s past year of commit activity
    0 0 0 0 Updated Feb 20, 2024
  • manuscript_bulkseq-scseq-abseq_integration Public
    csi-greifflab/manuscript_bulkseq-scseq-abseq_integration’s past year of commit activity
    R 1 0 0 0 Updated Nov 2, 2023
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