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1. detettore6110 detettore6110 Public

   Detect insertion sequence polymorphisms in bacterial genomes

   Jupyter Notebook

2. PacbioSnake PacbioSnake Public

   Python

3. popgen popgen Public

   Methods used in Stritt et al. 2021: "Migration without interbreeding: evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes", Molecular Ecology

   Python 1

4. tes tes Public

   Methods used in Stritt et al. 2019, "Diversity, dynamics and effects of long terminal repeat retrotransposons in the model grass Brachypodium distachyon", New Phytologist

   Jupyter Notebook 1

5. slim_simulations slim_simulations Public

   A model to simulate the clonal dynamics of within-host grow of a bacterial pathogen

   Slim

6. large_variable_alignment large_variable_alignment Public

   Python