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Issues list

A fatal error has been detected by the Java Runtime Environment
#116 by lumiratos was closed Jun 7, 2014
2
Problem executing binaries: extractor_fmt': undefined method sort_by!'
#114 by lumiratos was closed Mar 19, 2014
3
Add result concatenation to Tiler and/or maf_tile enhancement medium
#113 by csw was closed Dec 17, 2021
Handle empty MAF files bug medium
#112 by csw was closed Aug 8, 2012
Error out in maf_bgzip if output files exist easy enhancement
#111 by csw was closed Aug 8, 2012
Apply Access block filter in #slice easy enhancement
#110 by csw was closed Aug 8, 2012
Only open indexes as needed in Access bug easy
#109 by csw was closed Aug 8, 2012
Work on Kyoto Cabinet performance with large files bug medium
#108 by csw was closed Aug 8, 2012
1
Add option for 1-based intervals easy enhancement
#107 by csw was closed Aug 6, 2012
Add extended UCSC bin support bug medium
#106 by csw was closed Aug 6, 2012
Bail on newer index formats easy enhancement
#105 by csw was closed Aug 8, 2012
Measure mode performance enhancement medium
#104 by csw was closed Aug 8, 2012
2
Be more conservative with memory while indexing bug easy
#103 by csw was closed Aug 5, 2012
1
Decide how to handle inconsistent reference sequences bug medium question
#102 by csw was closed Dec 17, 2021
Eliminate all use of bare "rescue" bug easy
#101 by csw was closed Aug 6, 2012
Validate parsing against all UCSC MAF files medium
#100 by csw was closed Dec 17, 2021
2
Develop Galaxy wrappers enhancement hard
#99 by csw was closed Dec 17, 2021
Track BGZF block spilling enhancement medium
#98 by csw was closed Aug 3, 2012
1
Index secondary sequences enhancement medium
#97 by csw was closed Jul 24, 2012
Allow specifying tiling fill character easy enhancement
#96 by csw was closed Jul 24, 2012
Return block RV from Access#tile easy enhancement
#95 by csw was closed Jul 24, 2012
1
Return tiled alignments in a more usable form enhancement medium
#94 by csw was closed Jul 24, 2012
Look for use cases with other MAF tools question specs
#93 by csw was closed Dec 17, 2021
Add CLI tools for indexed extraction, slicing enhancement medium
#92 by csw was closed Jul 27, 2012 Full set of CLI tools, search by feature
@csw
#slice output is incorrect bug medium
#91 by csw was closed Jul 18, 2012 Release 0.3
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