A Research Methods for Psychology textbook

Brain-related -omics data

A Snakemake workflow for generating expression count tables from either locally stored fastq files or NCBI-SRA accessions for bulk RNA-seq

using k-prototype algorithm on mixed-type medical data

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads

Accurate estimation of SNP genotypes from DNA methylation data

A tool to Detect and Re-Align Mixed-up Samples based on multi-omics data

MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.

DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.

repository for bcb420 for Evgeniya Gorobets

Workshops presented by the Gladstone Bioinformatics Core

High-Performance Symbolic Regression in Python and Julia

Polygenic prediction via continuous shrinkage priors

PRS-on-SPARK

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

"NA Figure": visualization of the missing data distribution

Lo-Hi Splitter for Modern Splits of Molecular Datasets

Benchmarking DNA Language Models on Biologically Meaningful Tasks

GENA-LM is a transformer masked language model trained on human DNA sequence.

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena