R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

Scientific colormaps for python, with only numpy dependency

supervenn: precise and easy-to-read multiple sets visualization in Python

A tool to convert a Wallpaper's color scheme / palette, image to pixel art, color palette extraction, image upsacling with Adversarial Networks and more image processing features

Bilingual Language Model for Protein Sequence and Structure

Virtual whiteboard for sketching hand-drawn like diagrams

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Directed evolution of proteins in sequence space with gradients

a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)

R package to compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and ML models. Conduct linear and non-lin…

Scikit-learn compatible library for molecular fingerprints

A schema and validator for YAML.

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

Integration with (approximate) nearest neighbors libraries for scikit-learn + clustering based on with kNN-graphs.

Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

Fit interpretable models. Explain blackbox machine learning.

A 'ggplot2' extension that focusses on expanding the plotter's arsenal of guides, such as axes, legends and colour bars. It brings various improvements to existing guides by re-implementation, as w…

🧡 Follow everything in one place

Gaussian Process Models for Drug Response

Ray is an AI compute engine. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.

Official repository for the ProteinGym benchmarks

Episcanpy: Epigenomics Single Cell Analysis in Python

Tidy interface to polars

A tool to find sequencing data and metadata from public databases.

🧬 gget enables efficient querying of genomic reference databases

Implement a ChatGPT-like LLM in PyTorch from scratch, step by step

Estimated Marginal Means and Marginal Effects from Regression Models for ggplot2

Analyzing and visualizing KEGG information using the grammar of graphics