Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Tracking Rhythms in Plants: A motion detection algorithm for estimating circadian period from leaf movement data

Issuing badges to credit authors for their work on academic papers

Kraken taxonomic sequence classification system

Course materials for a Calculus MOOC

Machine Learning in R

Workshop page for Data Science in R at Norwich

Binomial SNP-caller from Pileup (Biscap) and comparison of FDR scripts

Classify and rank SNPs identified by cortex_con

Repository for crowd-sourced data from genomics analysis of the UK ash dieback (Chalara fraxinea) outbreak 2012

Identify causative mutations in a model genome from NGS reads using the NGM method.

Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-

Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-

Binder of samtools for ruby, on the top of FFI.

An extensible Ruby on Rails web-service application and database for visualising HTGS data

Implementation of an algorithm that can determine small RNA generative loci from high-throughput sequencing data.

HTML Documentation describing usage of Perl Modules

module for formatting and producing web pages for pretty result output

Varied tools for parsing and printing pretty blasts from de-novo peptide sequencing

Show multiple, overlapping events across calendar days and rows. Rails plugin.

A prototype rails app for a phosphoproteomics analysis tool and database

set of methods for working with files and directories that I use often

Some numerical methods I use fairly often

Set of modules for working with htgs reads and related software, maq, Bowtie etc

Perl Module for phosphoproteomics related bioinformatics tasks

The Sainsbury Lab Tool for estimating the likelihood of phosphorylation at possible sites in a peptide from Mass Spec data

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.