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1. ccdmb/predector ccdmb/predector Public

   Effector prediction pipeline based on protein properties.

   Shell 15 8

2. panann panann Public

   Pipelines for gene annotation of pangenomes.

   Nextflow 3 2

3. gffpal gffpal Public

   A flexible library for working with GFF data.

   Python 2 1

4. pante pante Public

   A pipeline for predicting and masking transposable elements in multiple genomes.

   Groovy 5 10

5. ccdmb/catastrophy ccdmb/catastrophy Public

   CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

   Python 6

6. mumflow mumflow Public

   A nextflow pipeline to run the mummer pipelines (align genomes, call snps) and process outputs into sane formats.

   Python 4 3