Miscellaneous scripts for applications of PacBio systems

Lantern installers binary downloads.

Documentation for Evolview

Simple Job Manager

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

Workflows for germline short variant discovery with GATK4

SMRT® Link is the web-based end-to-end workflow manager for the Sequel™ System.

a simple lightweight workflow engine for data analysis scripting

Pilon is an automated genome assembly improvement and variant detection tool

MuTect -- Accurate and sensitive cancer mutation detection

Official code repository for GATK versions 4 and up

Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead

Command line interface to the freedesktop.org trashcan.

RNA-seq aligner

Accelerate local LLM inference and finetuning (LLaMA, Mistral, ChatGLM, Qwen, Baichuan, Mixtral, Gemma, Phi, MiniCPM, etc.) on Intel XPU (e.g., local PC with iGPU and NPU, discrete GPU such as Arc,…

Hide screen when boss is approaching.

Next generation sequencing reads de novo assembler.

The Biological Observation Matrix (BIOM) Format Project

The DevNet project on github stores the PacBio DevNet website.

去掉支付宝AR红包的黑线，亲测有用

Repository containing all custom pipeline, perl scripts and R scripts used for RNA-sequencing data analyses

A fast multi-threaded k-mer counter

Source code for running GigaDB

FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

FIS3

Bayesian Evolutionary Analysis Sampling Trees