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BIgFOOT Public
computational method to perform immunoglobulin allele-level genotyping and identification of sample specific variation via flow variation graphs.
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phyloscanner Public
Forked from BDI-pathogens/phyloscannerPhylogenetics between and within hosts at once, all along the genome.
HTML GNU General Public License v3.0 UpdatedDec 8, 2023 -
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Assembly-Dereplicator Public
Forked from rrwick/Assembly-DereplicatorA tool for removing redundant genomes from a set of assemblies
Python GNU General Public License v3.0 UpdatedAug 17, 2023 -
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VGpop Public
Forked from Flavia95/VGpopSelection scans on VG
Python MIT License UpdatedAug 7, 2021 -
stdpopsim Public
Forked from popsim-consortium/stdpopsimA library of standard population genetic models
Python GNU General Public License v3.0 UpdatedAug 7, 2021 -
gatb-core Public
Forked from GATB/gatb-coreCore library of the Genome Analysis Toolbox with de-Bruijn graph
C++ UpdatedAug 7, 2021 -
LRECE Public
Forked from haowenz/LRECELong read error correction evaluation
Shell GNU General Public License v3.0 UpdatedAug 7, 2021 -
pyseer Public
Forked from mgalardini/pyseerSEER, reimplemented in python 🐍🔮
Python Apache License 2.0 UpdatedAug 7, 2021 -
k-mer counting software
Shell GNU Affero General Public License v3.0 UpdatedAug 7, 2021 -
SARS-CoV-2_workshop Public
Forked from COV-IRT/SARS-CoV-2_workshopPython MIT License UpdatedMar 30, 2021 -
GenABEL Public
Forked from cran/GenABEL❗ This is a read-only mirror of the CRAN R package repository. GenABEL — genome-wide SNP association analysis. Homepage: http://www.genabel.org, http://forum.genabel.org,<U+000a>http://genabel.r-fo…
R UpdatedMar 16, 2021 -
BBMap Public
Forked from BioInfoTools/BBMap(Not Offical) BBMap short read aligner, and other bioinformatic tools.
Java Other UpdatedFeb 11, 2021 -
kmer-db Public
Forked from refresh-bio/kmer-dbC++ GNU General Public License v3.0 UpdatedNov 21, 2020 -
rs-gfatovcf Public
Forked from HopedWall/rs-gfatovcfRust implementation of Flavia95's GFAtoVCF
Rust UpdatedAug 27, 2020 -
CPANG19 Public
Forked from GTPB/CPANG19CPANG19 - Computational PANGenomics (2019)
TeX Other UpdatedMay 7, 2020 -
NGmerge Public
Forked from harvardinformatics/NGmergeMerging paired-end reads and removing adapters
C MIT License UpdatedMar 6, 2020 -
seqwish Public
Forked from ekg/seqwishalignment to variation graph inducer
C++ MIT License UpdatedJan 16, 2020 -
HaploConduct Public
Forked from HaploConduct/HaploConductHaplotype-aware genome assembly toolkit
C++ GNU General Public License v3.0 UpdatedJan 8, 2020 -
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Hepatitis_B_Virus_alignment Public
Forked from tacatanach/Hepatitis_B_Virus_alignmentScripts for Fully automated sequence alignment methods outperform traditional methods for phylogenetic analysis of hepatitis B viruses
Perl UpdatedJan 8, 2019 -
dekupl Public
Forked from Transipedia/dekuplExhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
UpdatedOct 15, 2018 -
kameris Public
Forked from stephensolis/kamerisA fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks
Python MIT License UpdatedSep 22, 2018 -
Variant-graph-analysis Public
Forked from martinbjoerndal/Variant-graph-analysisMeasuring pairwise distances between population graphs built from variant data from the 1000 genomes project.
R UpdatedJun 1, 2017