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Drug-Gene Interaction Database (DGIdb)

Public repositories for the DGIdb project

Welcome to the Drug-Gene Interaction Database project

Introduction

In the era of clinical sequencing and personalized medicine, investigators are frequently presented with lists of mutated or otherwise altered genes implicated in disease for a specific patient or cohort. Numerous resources exist to help form hypotheses about how such genomic events might be targeted therapeutically. However, utilizing these resources typically involves tedious manual review of literature, clinical trial records, and knowledgebases. Few currently exist which collect and curate these resources and provide a simple interface for searching lists of genes against the existing compendia of known or potential drug-gene interactions. The drug-gene interaction database (DGIdb) attempts to address this challenge. Using a combination of expert curation and text-mining, drug-gene interactions have been mined from DrugBank, PharmGKB, ChEMBL, Drug Target Commons, and others. Genes have also been categorized as potentially druggable according to membership in selected pathways, molecular functions and gene families from the Gene Ontology, the Human Protein Atlas, IDG, "druggable genome" lists from Hopkins and Groom (2002) and Russ and Lampel (2005), and others. Drug and gene grouping is provided by the VICC Gene and Therapy Normalizer services. DGIdb contains over 10,000 genes and 20,000 drugs involved in nearly 70,000 drug-gene interactions or belonging to one of 43 potentially druggable gene categories. Users can enter a list of genes to retrieve all known or potentially druggable genes in that list. Results can be filtered by source, interaction type, or gene category. DGIdb is built on Ruby on Rails and PostgreSQL with a flexible relational database schema to accommodate metadata from various sources.

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  1. dgidb dgidb Public

    Rails frontend to The Genome Institute's drug gene interaction database.

    Ruby 95 32

Repositories

Showing 4 of 4 repositories
  • .github Public

    Project content for the DGIdb organization

    dgidb/.github’s past year of commit activity
    0 MIT 1 0 1 Updated Jan 27, 2025
  • dgidb/dgidb-citation-analysis’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 27, 2025
  • dgidb-v5 Public

    Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases

    dgidb/dgidb-v5’s past year of commit activity
    Ruby 22 MIT 4 89 (4 issues need help) 3 Updated Jan 24, 2025
  • dgidb Public

    Rails frontend to The Genome Institute's drug gene interaction database.

    dgidb/dgidb’s past year of commit activity
    Ruby 95 MIT 32 54 11 Updated Mar 8, 2023

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