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[MRG] update ignore_ident code for later use too (#259)
* update ignore_ident code for later use too
* fix, print
* add more matches to make tests work
[MRG] add code to support skipping genomes by ident (#255)
* add code to support skipping genomes by ident
* add test
* add 'skip_genomes' docs and tests
* fix a few things
[MRG] fix genome download rule (#233)
* fix parsing of genome csv
* update zip rule
* update zip info
* add genbank_cache/ to something that's tested by make test
[MRG] update mapping notebook to include SNP graph, and etc. (#168)
* fix gz problem with test-private
* copy_local_genomes now gzips files
* fix mapping notebook fig #s, include SNP figure
[MRG] fix lxml version in setup.py (#123)
* update lxml version
* update python versions
* fix lxml version in setup.py
Co-authored-by: Taylor Reiter <[email protected]>