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better intro comment
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dkoes committed Oct 27, 2016
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3 changes: 2 additions & 1 deletion rdconf.py
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from optparse import OptionParser
import os, gzip

'''Take query ligand (smi) and test ligands (smi) and output their tanimoto using rdkit fingerprints default'''
'''Given a smiles file, generate 3D conformers in output sdf.
Energy minimizes and filters conformers to meet energy window and rms constraints.'''

#convert smiles to sdf
def getRMS(mol, c1,c2):
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