Metagenomic classification of long-read sequencing data

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

Notes, Slides and Code for Online Classes

A LibTorch Basecaller for Oxford Nanopore Reads

A repository for GitHub class

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

MMseqs2: ultra fast and sensitive search and clustering suite

learning part of plp

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

AI-powered Documentation and Test Generation Tool

De novo assembler for single molecule sequencing reads using repeat graphs

🖤 Create and share beautiful images of your source code

CGE isolate pipeline