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Ampliclip Public
Tool to softclip reads in bam files based on amplicon primers
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 31, 2024 -
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biopython Public
Forked from biopython/biopythonOfficial git repository for Biopython (originally converted from CVS)
Python Other UpdatedJan 19, 2023 -
ENA_SARS_Cov2_nanopore Public
Pipeline for mapping SARS-CoV2 nanopore reads using nextflow
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This repository contains the scripts to reproduce the results and figures of the arbovirus platform comparison
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alireduce Public
Script for reducing GISAID SARS-CoV-2 sequence alignments based on nucleotide distance, sampling date and country
R GNU General Public License v3.0 UpdatedOct 19, 2021 -
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covid-sequence-analysis-workflow Public
Forked from enasequence/covid-sequence-analysis-workflowNextflow Apache License 2.0 UpdatedJun 4, 2021 -
N-A-W Public
Nanopore Analysis Workflow a workflow for demultiplexing and mapping nanopore amplicon data
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Porechop Public
Forked from rrwick/Porechopadapter trimmer for Oxford Nanopore reads
C++ GNU General Public License v3.0 UpdatedMar 17, 2021 -
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rhandsontable Public
Forked from jrowen/rhandsontableA htmlwidgets implementation of Handsontable.js
HTML Other UpdatedJul 8, 2020 -
cyjShiny Public
Forked from cytoscape/cyjShinyAn R/shiny widget for cytoscape.js
JavaScript MIT License UpdatedJan 28, 2020 -
zika-tutorial Public
Forked from nextstrain/zika-tutorialData and scripts for Zika virus tutorial
Python UpdatedNov 26, 2019 -
basicrcourse_brand Public
Forked from karlbrand/MolMedBasicRcourseR GNU General Public License v3.0 UpdatedMay 2, 2019 -
Bandage Public
Forked from rrwick/Bandagea Bioinformatics Application for Navigating De novo Assembly Graphs Easily
C++ GNU General Public License v3.0 UpdatedFeb 4, 2019 -
BASTA Public
Forked from timkahlke/BASTABasic Sequence Taxonomy Annotator
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rocker-versioned Public
Forked from rocker-org/rocker-versionedRun earlier versions of R using docker
Shell GNU General Public License v2.0 UpdatedMay 19, 2017 -
rocker Public
Forked from rocker-org/rockerR configurations for Docker
Shell GNU General Public License v2.0 UpdatedMay 3, 2017 -
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shiny Public
Forked from rstudio/shinyEasy interactive web applications with R
R Other UpdatedNov 19, 2016 -
igv.js Public
Forked from igvteam/igv.jsLightweight html5 version of the Integrative Genomics Viewer
JavaScript MIT License UpdatedNov 11, 2016 -
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dashboards Public
Forked from jupyter/dashboardsJupyter Dynamic Dashboards from Notebooks
Jupyter Notebook Other UpdatedApr 15, 2016 -
vsearch Public
Forked from torognes/vsearchVersatile open-source tool for metagenomics
C++ Other UpdatedApr 13, 2016 -
diamond Public
Forked from bbuchfink/diamondAccelerated BLAST compatible local sequence aligner.
C UpdatedMar 29, 2016