Skip to content

Issues: dpeerlab/SEACells

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

26 Open 34 Closed
26 Open 34 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Error fitting model on Jupyter lab via HPC cluster
#72 opened Sep 29, 2024 by li-xuyang28
Error when model.construct_kernel_matrix: can SEACells be applied in python command line, not just in Jupyter?
#71 opened Sep 1, 2024 by LiuCanidk
How to run SEACells efficiently on large-scale dataset
#70 opened Jul 22, 2024 by koh2ng0
2
What is the actual formula to construct the affinity kernel matrix?
#69 opened Jul 15, 2024 by caodudu
1
CUDA error while running "model.fit"
#66 opened May 9, 2024 by NekoClaviS
Spurious metacell
#65 opened May 6, 2024 by yxsee
The data cannot be downloaded
#63 opened Apr 24, 2024 by cfzgg
1
Handling metacell creation for rare cell types (<< 75 cells)
#61 opened Apr 15, 2024 by uqzqiao
maxFragmentLength=147
#60 opened Apr 5, 2024 by Aya-Balbaa
Custom Neighborhood Graph for Metacells
#59 opened Apr 1, 2024 by shahrozeabbas
1
No speed increase was observed when use_gpu=True
#58 opened Mar 28, 2024 by OMIC-coding
1
Aggregation of expression data ends up in matrix filled with NaN's
#57 opened Jan 30, 2024 by zvittorio
5
Scale or not scale be more suitable for computation of SEACells?
#56 opened Jan 4, 2024 by NPTL1201
wonder why the @parm ceiling can be set to 10^9
#54 opened Nov 2, 2023 by chenc327
[Question] Algorithm for PWM computation
#53 opened Oct 26, 2023 by josephineyates
Fail to install seacells via conda due to conflicts in environment.yaml
#52 opened Oct 5, 2023 by ChangSuBiostats
2
cell-cell affinity matrix
#49 opened Jul 15, 2023 by ytliu01
1
Reproducibility issue
#48 opened Jul 8, 2023 by evaham1
2
Renaming the Seacells
#46 opened Jun 7, 2023 by Gavin-Lijy
1
Many cells have zero non-trivial (>0.1) assignments
#43 opened May 30, 2023 by simozhou
1
Issue with model.initialize_archetypes()
#41 opened May 18, 2023 by iamsalil
4
Way too strict dependency pins
#39 opened May 5, 2023 by Zethson
3
MemoryError when fitting model.fit
#34 opened Apr 3, 2023 by tatyana-perlova
10
model.fit hangs indefinitely
#18 opened Jul 25, 2022 by smorabit
12
Local paths in requirements.txt
#15 opened Jul 6, 2022 by maxim-h
@sitarapersad
3
ProTip! Exclude everything labeled bug with -label:bug.