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roshan9128 authored Oct 6, 2018
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Expand Up @@ -25,7 +25,9 @@ MAGIC has a few important parameters that play important role the quality of res

3). t = This defines the power to which the Markov matrix is to be raised. This is arguably the most important parameter. A very high t can lead to over-smoothed results while a low t can lead to noisy results. Therefore, it is crucial to choose an appropriate t. While we propose a data-driven method to choose t in the paper, the choice of t can be context-dependent. It is crucial to spend time looking at the data and selecting t appropriately. Typically, we recommend t between 3 and 8.

For example Python notebooks, please go inside the notebooks directory and find and example notebook that illustrates in detail the appropriate use of MAGIC.
For example Python notebooks, please go inside the notebooks directory and open: Magic_single_cell_RNAseq.ipynb

For example MATLAB usage, please go inside the matlab directory and open:

#### Installation and dependencies for the Python version
1. The Python3 version of MAGIC can be installed using:
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