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Commits on Jan 3, 2019

• Update copyright block (and remove a stray whitespace).

  brianwalenz

  committed
  93e66aa

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Commits on Nov 15, 2018

• Move unitigConsensus.C out of the libcns/ directory.

  brianwalenz

  committed
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Commits on Oct 22, 2018

• Update for the last copyright update.

  brianwalenz

  committed
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Commits on Jul 21, 2018

• Put 'stack trace' in the 'system' library.

  brianwalenz

  committed
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• Fold reverse-complementing into 'sequence' library.

  brianwalenz

  committed
  1674b22

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• Collect all system/hardware related functions into system.H.

  brianwalenz

  committed
  9375de2

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• Collect all string processing classes/functions into strings.H.

  brianwalenz

  committed
  8076733

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• Move implementation of readBuffer and writeBuffer out of class definition.

  brianwalenz

  committed
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Commits on Jul 20, 2018

• Make utility/files.H and utility/strings.H.

  brianwalenz

  committed
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Commits on Apr 18, 2018

• Rename gatekeeper/gkpStore to sequence store/seqStore. Existing assemblies should be upgradable by just renaming *.gkpStore to *.seqStore.

  brianwalenz

  committed
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Commits on Mar 16, 2018

• Tidy up gkStoreInfo.

  brianwalenz

  committed
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Commits on Feb 27, 2018

• Update for the last copyright update.

  brianwalenz

  committed
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Commits on Feb 8, 2018

• Merge in trioCanu.

  brianwalenz

  committed
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Commits on Oct 3, 2017

• Very big change to gkpStore and tigStore.

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  brianwalenz

  committed
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Commits on Oct 2, 2017

• Add options to load file into core. Move memoryMappedFile implementation to .C file.

  brianwalenz

  committed
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Commits on Sep 8, 2017

• Engineering; move global score computation outside main function.

  brianwalenz

  committed
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Commits on Aug 24, 2017

• Add refactored falcon consensus.

  brianwalenz

  committed
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Commits on Aug 14, 2017

• Update for the last copyright update.

  brianwalenz

  committed
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Commits on Jul 17, 2017

• Move optimize() to own file.

  brianwalenz

  committed
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Commits on Apr 17, 2017

• Update for the last copyright update.

  brianwalenz

  committed
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Commits on Feb 24, 2017

• Move libkmer from kmer/ to src/meryl/

  brianwalenz

  committed
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Commits on Dec 7, 2016

• Rename PopBubbles() to MergeOrphans(), because it isn't popping bubbles but is merging orphans.

  brianwalenz

  committed
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Commits on Nov 21, 2016

• Update for the last copyright update.

  brianwalenz

  committed
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Commits on Oct 28, 2016

• Clean up ovStore building (sequential and parallel) code. Fix a few histogram bugs too.

  brianwalenz

  committed
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Commits on Oct 24, 2016

• Move ovFile and ovOverlap to their own file.

  brianwalenz

  committed
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Commits on Sep 23, 2016

• Correct paths on last derived files.

  brianwalenz

  committed
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Commits on Aug 12, 2016

• Rename files with 'frag' to be files with 'read'.

  brianwalenz

  committed
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Commits on Aug 9, 2016

• Rename UnitigVector to TigVector.

  brianwalenz

  committed
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Commits on May 18, 2016

• Update for the last copyright update.

  brianwalenz

  committed
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Commits on Apr 28, 2016

• Add copyright info for AS_BAT_FragmentInfo.H.

  brianwalenz

  committed
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Commits on Apr 18, 2016

• Add tgStore 'compression' - move data from old versions to the current version.

  brianwalenz

  committed
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Commits on Apr 13, 2016

• Remove 'old splitting'.

  brianwalenz

  committed
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Commits on Mar 4, 2016

• Update copyrights.

  brianwalenz

  committed
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Commits on Nov 19, 2015

• Update copyrights. Most changes are just adding stop dates to the BNBI supported work. Thanks, guys!

  brianwalenz

  committed
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Commits on Aug 20, 2015

• Sort the 'derived from' data, to hopefully avoid churn.

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  brianwalenz

  committed
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