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fixed conda installation. Added manual installation.
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dwromero committed Feb 11, 2021
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5 changes: 4 additions & 1 deletion README.md
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Expand Up @@ -44,7 +44,7 @@ This repository is organized as follows:
###### conda *(recommended)*
In order to reproduce our results, please first install the required dependencies. This can be done by:
```
conda create --name ckconv --file conda_requirements.txt
conda env create -f conda_requirements.txt
```
This will create the conda environment `ckconv` with the correct dependencies.

Expand All @@ -57,6 +57,9 @@ conda activate ckconv
pip install -r requirements.txt
```

###### manual installation
If you prefer to construct the conda environment manually, please follow the commands speficiend in `manual_installation.txt`

#### Experiments and `config` files
To reproduce the experiments in the paper, please follow the configurations given in the file `runs/my_experiment.sh`

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351 changes: 165 additions & 186 deletions conda_requirements.txt
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@@ -1,186 +1,165 @@
# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_libgcc_mutex=0.1=main
absl-py=0.10.0=pypi_0
appdirs=1.4.4=pypi_0
argh=0.26.2=pyh9f0ad1d_1002
argon2-cffi=20.1.0=py37h8f50634_1
async_generator=1.10=py_0
attrs=20.2.0=pyh9f0ad1d_0
backcall=0.2.0=pyh9f0ad1d_0
backports=1.0=py_2
backports.functools_lru_cache=1.6.1=py_0
blas=1.0=mkl
bleach=3.2.1=pyh9f0ad1d_0
brotlipy=0.7.0=py37h8f50634_1000
ca-certificates=2021.1.19=h06a4308_0
certifi=2020.6.20=pyhd3eb1b0_3
cffi=1.14.3=py37he30daa8_0
cfgv=3.2.0=pypi_0
chardet=3.0.4=py37hc8dfbb8_1007
click=7.1.2=pyh9f0ad1d_0
configparser=5.0.1=py_0
contextlib2=0.6.0.post1=pypi_0
cryptography=3.1.1=py37hb09aad4_0
cudatoolkit=10.1.243=h6bb024c_0
cycler=0.10.0=py_2
dbus=1.13.18=hb2f20db_0
decorator=4.4.2=py_0
defusedxml=0.6.0=py_0
distlib=0.3.1=pypi_0
docker-pycreds=0.4.0=py_0
entrypoints=0.3=py37hc8dfbb8_1001
expat=2.2.10=he6710b0_2
filelock=3.0.12=pypi_0
fontconfig=2.13.0=h9420a91_0
freetype=2.10.2=h5ab3b9f_0
gitdb=4.0.5=py_0
gitpython=3.1.9=py_0
glib=2.66.1=h92f7085_0
gql=0.1.0=py_0
graphql-core=3.1.2=py_0
gst-plugins-base=1.14.0=hbbd80ab_1
gstreamer=1.14.0=hb31296c_0
icu=58.2=he6710b0_3
identify=1.5.5=pypi_0
idna=2.10=pyh9f0ad1d_0
importlib-metadata=2.0.0=py37hc8dfbb8_0
importlib_metadata=2.0.0=0
intel-openmp=2020.2=254
ipykernel=5.3.4=py37h43977f1_0
ipython=7.18.1=py37hc6149b9_0
ipython_genutils=0.2.0=py_1
ipywidgets=7.5.1=py_1
jedi=0.17.2=py37hc8dfbb8_0
jinja2=2.11.2=pyh9f0ad1d_0
joblib=0.17.0=py_0
jpeg=9b=h024ee3a_2
json5=0.9.5=pyh9f0ad1d_0
jsonschema=3.2.0=py37hc8dfbb8_1
jupyter=1.0.0=py37_7
jupyter_client=6.1.7=py_0
jupyter_console=6.2.0=py_0
jupyter_core=4.6.3=py37hc8dfbb8_1
jupyterlab=2.2.9=py_0
jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
jupyterlab_server=1.2.0=py_0
kiwisolver=1.2.0=py37h99015e2_0
lcms2=2.11=h396b838_0
ld_impl_linux-64=2.33.1=h53a641e_7
libedit=3.1.20191231=h14c3975_1
libffi=3.3=he6710b0_2
libgcc-ng=9.1.0=hdf63c60_0
libgfortran-ng=7.3.0=hdf63c60_0
libpng=1.6.37=hbc83047_0
libprotobuf=3.13.0.1=h8b12597_0
libsodium=1.0.18=h516909a_1
libstdcxx-ng=9.1.0=hdf63c60_0
libtiff=4.1.0=h2733197_1
libuuid=1.0.3=h1bed415_2
libuv=1.40.0=h7b6447c_0
libxcb=1.14=h7b6447c_0
libxml2=2.9.10=hb55368b_3
llvmlite=0.35.0=pypi_0
lz4-c=1.9.2=heb0550a_3
markupsafe=1.1.1=py37h8f50634_1
matplotlib=3.3.2=0
matplotlib-base=3.3.2=py37hd478181_0
mistune=0.8.4=py37h8f50634_1001
mkl=2020.2=256
mkl-service=2.3.0=py37he904b0f_0
mkl_fft=1.2.0=py37h23d657b_0
mkl_random=1.1.1=py37h0573a6f_0
ml-collections=0.1.0=pypi_0
nbclient=0.5.0=py_0
nbconvert=6.0.7=py37hc8dfbb8_0
nbformat=5.0.7=py_0
ncurses=6.2=he6710b0_1
nest-asyncio=1.4.1=py_0
ninja=1.10.1=py37hfd86e86_0
nodeenv=1.5.0=pypi_0
notebook=6.1.4=py37hc8dfbb8_0
numba=0.52.0=pypi_0
numpy=1.19.1=py37hbc911f0_0
numpy-base=1.19.1=py37hfa32c7d_0
nvidia-ml=7.352.0=py_0
olefile=0.46=py37_0
openssl=1.1.1i=h27cfd23_0
packaging=20.4=pyh9f0ad1d_0
pandas=1.2.0=pypi_0
pandoc=2.10.1=h516909a_0
pandocfilters=1.4.2=py_1
parso=0.7.1=pyh9f0ad1d_0
pathtools=0.1.2=py_1
patsy=0.5.1=pypi_0
pcre=8.44=he6710b0_0
pexpect=4.8.0=py37hc8dfbb8_1
pickleshare=0.7.5=py37hc8dfbb8_1001
pillow=7.2.0=py37hb39fc2d_0
pip=20.2.3=py37_0
plotly=4.13.0=pypi_0
pre-commit=2.7.1=pypi_0
prometheus_client=0.8.0=pyh9f0ad1d_0
promise=2.3=py37hc8dfbb8_1
prompt-toolkit=3.0.7=py_0
prompt_toolkit=3.0.7=0
protobuf=3.13.0.1=py37h3340039_0
psutil=5.7.2=py37h8f50634_0
ptyprocess=0.6.0=py_1001
pycparser=2.20=pyh9f0ad1d_2
pygments=2.7.1=py_0
pyopenssl=19.1.0=py_1
pyparsing=2.4.7=pyh9f0ad1d_0
pyqt=5.9.2=py37h05f1152_2
pyrsistent=0.17.3=py37h8f50634_0
pysocks=1.7.1=py37hc8dfbb8_1
python=3.7.9=h7579374_0
python-dateutil=2.8.1=py_0
python_abi=3.7=1_cp37m
pytorch=1.7.0=py3.7_cuda10.1.243_cudnn7.6.3_0
pytz=2020.5=pypi_0
pyyaml=5.3.1=py37h8f50634_0
pyzmq=19.0.2=py37hac76be4_1
qt=5.9.7=h5867ecd_1
qtconsole=4.7.7=py_0
qtpy=1.9.0=py_0
readline=8.0=h7b6447c_0
requests=2.24.0=pyh9f0ad1d_0
retrying=1.3.3=pypi_0
scikit-learn=0.23.2=py37h0573a6f_0
scipy=1.1.0=py37hfa4b5c9_1
send2trash=1.5.0=py_0
sentry-sdk=0.18.0=pyh9f0ad1d_0
setuptools=50.3.0=py37hb0f4dca_1
shortuuid=1.0.1=py37hc8dfbb8_2
sip=4.19.8=py37hf484d3e_0
six=1.15.0=py_0
sktime=0.5.1=pypi_0
smmap=3.0.4=pyh9f0ad1d_0
sqlite=3.33.0=h62c20be_0
statsmodels=0.12.1=pypi_0
subprocess32=3.5.4=pypi_0
terminado=0.9.1=py37hc8dfbb8_0
testpath=0.4.4=py_0
threadpoolctl=2.1.0=pyh5ca1d4c_0
tk=8.6.10=hbc83047_0
toml=0.10.1=pypi_0
torchaudio=0.7.0=py37
torchvision=0.8.1=py37_cu101
tornado=6.0.4=py37h8f50634_1
traitlets=5.0.4=py_1
typing_extensions=3.7.4.3=py_0
urllib3=1.25.10=py_0
virtualenv=20.0.33=pypi_0
wandb=0.10.11=pypi_0
watchdog=0.10.3=py37hc8dfbb8_1
wcwidth=0.2.5=pyh9f0ad1d_2
webencodings=0.5.1=py_1
wheel=0.35.1=py_0
widgetsnbextension=3.5.1=py37_0
xz=5.2.5=h7b6447c_0
yaml=0.2.5=h516909a_0
zeromq=4.3.3=he1b5a44_2
zipp=3.3.0=py_0
zlib=1.2.11=h7b6447c_3
zstd=1.4.5=h9ceee32_0
name: ckconv
channels:
- pytorch
- anaconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- anyio=2.1.0=py37h89c1867_0
- argh=0.26.2=pyh9f0ad1d_1002
- argon2-cffi=20.1.0=py37h4abf009_2
- async_generator=1.10=py_0
- attrs=20.3.0=pyhd3deb0d_0
- babel=2.9.0=pyhd3deb0d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.1=py_0
- blas=1.0=mkl
- bleach=3.3.0=pyh44b312d_0
- brotlipy=0.7.0=py37hb5d75c8_1001
- ca-certificates=2020.10.14=0
- certifi=2020.6.20=py37_0
- cffi=1.14.4=py37h261ae71_0
- chardet=4.0.0=py37h89c1867_1
- click=7.1.2=pyh9f0ad1d_0
- configparser=5.0.1=py_0
- cryptography=2.9.2=py37hb09aad4_0
- cudatoolkit=10.1.243=h6bb024c_0
- cycler=0.10.0=py_2
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- docker-pycreds=0.4.0=py_0
- entrypoints=0.3=pyhd8ed1ab_1003
- freetype=2.10.4=h5ab3b9f_0
- gitdb=4.0.5=pyhd8ed1ab_1
- gitpython=3.1.12=pyhd8ed1ab_0
- gql=0.1.0=py_0
- graphql-core=3.1.3=pyhd8ed1ab_0
- icu=67.1=he1b5a44_0
- idna=2.10=pyh9f0ad1d_0
- importlib-metadata=3.4.0=py37h89c1867_0
- importlib_metadata=3.4.0=hd8ed1ab_0
- intel-openmp=2020.2=254
- ipykernel=5.4.3=py37h888b3d9_0
- ipython=7.20.0=py37h888b3d9_2
- ipython_genutils=0.2.0=py_1
- jedi=0.18.0=py37h89c1867_2
- jinja2=2.11.3=pyh44b312d_0
- joblib=0.17.0=py_0
- jpeg=9b=h024ee3a_2
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=3.2.0=py_2
- jupyter_client=6.1.11=pyhd8ed1ab_1
- jupyter_core=4.7.1=py37h89c1867_0
- jupyter_server=1.3.0=py37h89c1867_0
- jupyterlab=3.0.7=pyhd8ed1ab_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_server=2.2.0=pyhd8ed1ab_0
- kiwisolver=1.3.1=py37hc928c03_0
- lcms2=2.11=h396b838_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libedit=3.1.20191231=h14c3975_1
- libffi=3.3=he6710b0_2
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.13.0.1=h8b12597_0
- libsodium=1.0.18=h36c2ea0_1
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.1.0=h2733197_1
- libuv=1.40.0=h7b6447c_0
- lz4-c=1.9.3=h2531618_0
- markupsafe=1.1.1=py37hb5d75c8_2
- matplotlib=3.2.2=1
- matplotlib-base=3.2.2=py37h1d35a4c_1
- mistune=0.8.4=py37h4abf009_1002
- mkl=2020.2=256
- mkl-service=2.3.0=py37he8ac12f_0
- mkl_fft=1.2.0=py37h23d657b_0
- mkl_random=1.1.1=py37h0573a6f_0
- nbclassic=0.2.6=pyhd8ed1ab_0
- nbclient=0.5.1=py_0
- nbconvert=6.0.7=py37h89c1867_3
- nbformat=5.1.2=pyhd8ed1ab_1
- ncurses=6.2=he6710b0_1
- nest-asyncio=1.4.3=pyhd8ed1ab_0
- ninja=1.10.2=py37hff7bd54_0
- notebook=6.2.0=py37h89c1867_0
- numpy=1.19.2=py37h54aff64_0
- numpy-base=1.19.2=py37hfa32c7d_0
- nvidia-ml=7.352.0=py_0
- olefile=0.46=py37_0
- openssl=1.1.1h=h7b6447c_0
- packaging=20.9=pyh44b312d_0
- pandoc=2.11.4=h7f98852_0
- pandocfilters=1.4.2=py_1
- parso=0.8.1=pyhd8ed1ab_0
- pathtools=0.1.2=py_1
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pillow=8.1.0=py37he98fc37_0
- pip=20.3.3=py37h06a4308_0
- prometheus_client=0.9.0=pyhd3deb0d_0
- promise=2.3=py37h89c1867_3
- prompt-toolkit=3.0.14=pyha770c72_0
- protobuf=3.13.0.1=py37h745909e_1
- psutil=5.7.3=py37hb5d75c8_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.7.4=pyhd8ed1ab_0
- pyopenssl=19.1.0=py37_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.17.3=py37h4abf009_1
- pysocks=1.7.1=py37h89c1867_3
- python=3.7.9=h7579374_0
- python-dateutil=2.8.1=py_0
- python_abi=3.7=1_cp37m
- pytorch=1.7.1=py3.7_cuda10.1.243_cudnn7.6.3_0
- pytz=2021.1=pyhd8ed1ab_0
- pyyaml=5.3.1=py37hb5d75c8_1
- pyzmq=20.0.0=py37h5a562af_1
- readline=8.1=h27cfd23_0
- requests=2.25.1=pyhd3deb0d_0
- scikit-learn=0.23.2=py37h0573a6f_0
- scipy=1.6.0=py37h91f5cce_0
- send2trash=1.5.0=py_0
- sentry-sdk=0.19.5=pyhd3deb0d_0
- setuptools=52.0.0=py37h06a4308_0
- shortuuid=1.0.1=py37h89c1867_4
- six=1.15.0=py37h06a4308_0
- smmap=3.0.5=pyh44b312d_0
- sniffio=1.2.0=py37h89c1867_1
- sqlite=3.33.0=h62c20be_0
- subprocess32=3.5.4=py_1
- terminado=0.9.2=py37h89c1867_0
- testpath=0.4.4=py_0
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=hbc83047_0
- torchaudio=0.7.2=py37
- torchvision=0.8.2=py37_cu101
- tornado=6.1=py37h4abf009_0
- traitlets=5.0.5=py_0
- typing_extensions=3.7.4.3=pyh06a4308_0
- urllib3=1.26.3=pyhd8ed1ab_0
- wandb=0.10.18=pyhd8ed1ab_0
- watchdog=0.10.4=py37h89c1867_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- wheel=0.36.2=pyhd3eb1b0_0
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h516909a_0
- zeromq=4.3.3=he6710b0_3
- zipp=3.4.0=py_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.5=h9ceee32_0
- pip:
- absl-py==0.11.0
- contextlib2==0.6.0.post1
- llvmlite==0.35.0
- ml-collections==0.1.0
- numba==0.52.0
- pandas==1.2.2
- patsy==0.5.1
- sktime==0.5.3
- statsmodels==0.12.2
1 change: 1 addition & 0 deletions manual_installation.txt
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Expand Up @@ -6,4 +6,5 @@ conda install -c conda-forge notebook
conda install -c conda-forge jupyterlab
conda install -c conda-forge wandb
pip install ml-collections
pip install sktime
conda install -c anaconda scikit-learn
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