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Commits on Dec 11, 2024

• Catch Abricate non-zero exit [CW-5370]

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  committed
  ef1fe42

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Commits on Nov 15, 2024

• Add exceptions, improve docs [CW-5053]

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  committed
  c616bc5

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Commits on Nov 7, 2024

• fix ci test after cw-5236

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  committed
  a7961e0

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Commits on Sep 20, 2024

• real time with exclude host [CW-4965]

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Commits on Sep 11, 2024

• [CW-4912] Split amr real time

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  committed
  23efe6e

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• template updates

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  committed
  247cf8a

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Commits on Sep 9, 2024

• [CW-3497] Summary stats

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  committed
  ffc6790

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Commits on Sep 6, 2024

• [CW-4514] Output readid taxid

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  committed
  3aca295

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Commits on Sep 3, 2024

• [CW-4388] Remove split_prefix for the user, enable it automatically

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  committed
  0250bf3

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Commits on Sep 2, 2024

• [CW-4839] Use igv instead of keep_bam to enable IGV

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  committed
  e19e76c

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Commits on Jun 19, 2024

• avoid writing an empty file [CW-3988]

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  committed
  c31b24d

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Commits on Jun 5, 2024

• Do not use store_dir for CI tag check

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  committed
  e6240a0

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Commits on Jun 4, 2024

• modify ci test

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  committed
  453249f

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• Update demo [CW-4158]

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  committed
  4db6f9c

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Commits on May 30, 2024

• enable IGV from minimap2 pipeline [CW-3729]

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  committed
  21d0421

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Commits on Apr 4, 2024

• Add two filters based on identity in the minimap2 approach [CW-3757]

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  070d9f4

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Commits on Mar 19, 2024

• Exclude empty files from the analysis [CW-3722]

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  committed
  b0520d7

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Commits on Mar 18, 2024

• template updates [CW-3743]

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  committed
  b8af3b3

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Commits on Feb 20, 2024

• Use a random port when testing realtime [CW-3576]

  SamStudio8

  committed
  a89f7ec

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Commits on Feb 9, 2024

• Accept bam as valid input [CW-2243]

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  committed
  bf1d846

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Commits on Feb 7, 2024

• fix custom db memory [CW-3310]

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  committed
  343e994

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Commits on Feb 6, 2024

• change default db [CW-3286]

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  committed
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Commits on Jan 16, 2024

• template updates

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  committed
  1c27a96

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Commits on Oct 31, 2023

• Split real time [CW-2862]

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  committed
  e7a8b68

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Commits on Oct 27, 2023

• Use store_dir in minimap and fix it in the kraken2 [CW-2833]

  

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  SamStudio8

  committed
  4989c17

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Commits on Oct 5, 2023

• Bug abundance cutoff [CW-2872]

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  committed
  fea2a7d

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Commits on Oct 4, 2023

• Docs tag 2.6.0 [CW-2677]

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  committed
  89def3c

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Commits on Sep 29, 2023

• metrics [CW-2709]

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  fb1eaee

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Commits on Sep 6, 2023

• improve docs with new features and tag 2.5.0

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  committed
  b99ef19

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• add per read kraken2 reports [CW-2644]

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  committed
  fc3ce5c

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• Kraken Confidence [CW-2687]

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  committed
  c792985

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Commits on Sep 4, 2023

• Remove host reads [CW-2640]

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  committed
  2fb72f2

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Commits on Aug 23, 2023

• Abundance cutoff [CW-2613]

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  committed
  9f11554

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Commits on Jul 21, 2023

• Resolve CW-2288 "Abricate amr"

  

  Christopher Alder

  committed
  41ed0fa

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Commits on Jul 19, 2023

• Add taxonomic rank [CW-2405]

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  committed
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