v2.12.0
Added
bracken_threshold
parameter to adjust bracken minimum read threshold, default 10.
Fixed
- Publish AMR results to the output directory when real time is disabled.
- Abricate process failure is now correctly caught by the workflow.
Changed
- Reconcile workflow with wf-template v5.3.3
- Update wf-metagenomics image for improved fastcat/bamstats.