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@epiforecasts

Epiforecasts

Researchers at the London School of Hygiene & Tropical Medicine doing research to forecast infectious diseases and perform real-time analyses.
README.md

We are a research group based at the Centre for Mathematical Modelling of Infectious Diseases of the London School of Hygiene & Tropical Medicine developing methodology and tools for real-time modelling and forecasting of infectious disease outbreaks. We systematically assess these methods by their predictive ability and apply them in order to improve decision making. Ultimately, our goal is to develop and use robust methodology that makes the most of available resources to provide insights useful for outbreak response, control and prevention, and to make them available as tools to others.

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  1. EpiNow2 EpiNow2 Public

    Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

    R 117 33

  2. covidregionaldata covidregionaldata Public

    An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisa…

    R 37 16

  3. covid19.nhs.data covid19.nhs.data Public

    Trust-level COVID-19 hospitalisations in England

    R 8 3

  4. socialmixr socialmixr Public

    R package for deriving social mixing matrices from survey data.

    R 38 11

  5. omicron-sgtf-forecast omicron-sgtf-forecast Public

    In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence for changes in transmission advantage over time for the Omi…

    R 15 4

  6. scoringutils scoringutils Public

    Utilities for Scoring and Assessing Predictions

    R 49 21

Repositories

Showing 10 of 101 repositories
  • europe-covid-forecast Public
    epiforecasts/europe-covid-forecast’s past year of commit activity
    R 4 MIT 1 5 (1 issue needs help) 0 Updated Dec 29, 2024
  • EpiNow2 Public

    Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

    epiforecasts/EpiNow2’s past year of commit activity
    R 117 33 40 (1 issue needs help) 4 Updated Dec 20, 2024
  • stanedit Public

    Edit stan models from R

    epiforecasts/stanedit’s past year of commit activity
    R 2 0 1 1 Updated Dec 9, 2024
  • stackr Public

    Model stacking for predictive ensembles

    epiforecasts/stackr’s past year of commit activity
    HTML 5 MIT 3 5 1 Updated Dec 9, 2024
  • socialmixr Public

    R package for deriving social mixing matrices from survey data.

    epiforecasts/socialmixr’s past year of commit activity
    R 38 11 16 (4 issues need help) 4 Updated Dec 9, 2024
  • scoringutils Public

    Utilities for Scoring and Assessing Predictions

    epiforecasts/scoringutils’s past year of commit activity
    R 49 21 99 (11 issues need help) 0 Updated Dec 9, 2024
  • dist.spec Public

    Define probability distributions with certain or uncertain parameters

    epiforecasts/dist.spec’s past year of commit activity
    R 1 MIT 0 2 1 Updated Dec 9, 2024
  • qrensemble Public

    Function and example for quantile regression average

    epiforecasts/qrensemble’s past year of commit activity
    R 3 MIT 0 0 1 Updated Dec 9, 2024
  • epiforecasts.github.io Public

    Quarto website for EpiForecasts

    epiforecasts/epiforecasts.github.io’s past year of commit activity
    HTML 4 6 8 1 Updated Dec 1, 2024
  • eval-by-method Public

    Thematic analysis of model performance in the European COVID-19 Forecast Hub

    epiforecasts/eval-by-method’s past year of commit activity
    R 2 0 0 2 Updated Nov 22, 2024
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