Skip to content

Fix small sample size consensus clustering #298

Fix small sample size consensus clustering

Fix small sample size consensus clustering #298

Workflow file for this run

name: Build distributions
on:
pull_request:
release:
types:
- published
jobs:
ruff:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
- run: pip install ruff
- name: Check formatting
run: ruff format --check
- name: Check linting
run: ruff check --output-format=github .
tests_and_coverage:
needs: [ruff]
name: Run unit tests and upload coverage report
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-latest]
python-version: ["3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install test dependencies
run: pip install tox tox-gh-actions
- name: Run tests and build coverage report
run: tox
# upload the coverage report to coveralls.io
- name: Upload coverage reports to Coveralls
uses: coverallsapp/[email protected]
with:
parallel: true
if: ${{ matrix.python-version == '3.12' }}
finish_coverage:
needs: [tests_and_coverage]
name: Notify Coveralls that the parallel build has finished
runs-on: ubuntu-latest
steps:
- name: Close parallel build
uses: coverallsapp/[email protected]
with:
parallel-finished: true
build_sdist:
needs: [ruff]
name: Build source distribution
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Build source distribution
run: pipx run build --sdist
- uses: actions/upload-artifact@v4
with:
name: inmoose_sdist
path: dist/inmoose-*.tar.gz
upload_pypi:
needs: [build_sdist, tests_and_coverage]
name: Publish source distribution on PyPI
runs-on: ubuntu-latest
permissions:
# IMPORTANT: this permission is mandatory for trusted publishing
id-token: write
if: github.event_name == 'release' && github.event.action == 'published'
steps:
- uses: actions/download-artifact@v4
with:
name: inmoose_sdist
path: dist
- uses: pypa/[email protected]