Fix small sample size consensus clustering #298
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name: Build distributions | |
on: | |
pull_request: | |
release: | |
types: | |
- published | |
jobs: | |
ruff: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
- run: pip install ruff | |
- name: Check formatting | |
run: ruff format --check | |
- name: Check linting | |
run: ruff check --output-format=github . | |
tests_and_coverage: | |
needs: [ruff] | |
name: Run unit tests and upload coverage report | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-latest] | |
python-version: ["3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install test dependencies | |
run: pip install tox tox-gh-actions | |
- name: Run tests and build coverage report | |
run: tox | |
# upload the coverage report to coveralls.io | |
- name: Upload coverage reports to Coveralls | |
uses: coverallsapp/[email protected] | |
with: | |
parallel: true | |
if: ${{ matrix.python-version == '3.12' }} | |
finish_coverage: | |
needs: [tests_and_coverage] | |
name: Notify Coveralls that the parallel build has finished | |
runs-on: ubuntu-latest | |
steps: | |
- name: Close parallel build | |
uses: coverallsapp/[email protected] | |
with: | |
parallel-finished: true | |
build_sdist: | |
needs: [ruff] | |
name: Build source distribution | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Build source distribution | |
run: pipx run build --sdist | |
- uses: actions/upload-artifact@v4 | |
with: | |
name: inmoose_sdist | |
path: dist/inmoose-*.tar.gz | |
upload_pypi: | |
needs: [build_sdist, tests_and_coverage] | |
name: Publish source distribution on PyPI | |
runs-on: ubuntu-latest | |
permissions: | |
# IMPORTANT: this permission is mandatory for trusted publishing | |
id-token: write | |
if: github.event_name == 'release' && github.event.action == 'published' | |
steps: | |
- uses: actions/download-artifact@v4 | |
with: | |
name: inmoose_sdist | |
path: dist | |
- uses: pypa/[email protected] | |