📚 Freely available programming books

Performant Pythonic GenomicRanges

A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings

Command-line JSON processor

dotmesh (dm) is like git for your data volumes (databases, files etc) in Docker and Kubernetes

SQL powered operating system instrumentation, monitoring, and analytics.

Library for building powerful interactive command line applications in Python

Bandit is a tool designed to find common security issues in Python code.

FaStore - high-performance FASTQ files compressor

Efficient Counter that uses a limited (bounded) amount of memory regardless of data size.

Record terminal sessions as SVG animations

API Documentation for Python Projects

A security testing Slackbot built with a Kubernetes backend on the Google Cloud Platform

Tools for developing and running pipelines with the Genomics API

Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown

JSON for Modern C++

structural variant calling and genotyping with existing tools, but, smoothly.

TIDDIT - structural variant calling

A flexible framework for rapid genome analysis and interpretation

C++ library for genomic region based storage and querying

nim wrapper for htslib for parsing genomics data files

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

SIMD partial order alignment tool/library

Quickly and accurately render even the largest data.

Principal component analysis of SNP data with interactive plot

The configuration and scripts for using spark within a Sun Grid Engine environment

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Software to help identify overlap between association scan results and GWAS hit catalogs.