Added FOC for NRT_STREAMFLOW cases.

NOTE: We don't have test cases for JULES, so some further changes are
likely.

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/README

@@ -0,0 +1,20 @@
+JULES namelist collections.
+
+ps41_nml_15min/ is for running JULES in PS41 configuration, with 3 snow layers.
+THIS IS THE CONFIGURATION RECOMMENDED FOR USE IN OPERATIONS BY USAF.
+
+single_snow_layer/ is for running JULES in a similar configuration, but with
+only 1 snow layer.  These were used for running LIS7.3-JULES5.0
+"warm-started" from UM Dump files in 2017 and 2018, which used a single
+snow layer.
+
+*NOTE* Users will need to edit three namelist files to update paths valid
+on their local machine.  They are:
+
+ancillaries.nml:  Edit path to 'tile_fractions.dat' (included with namelist
+                  files)
+drive.nml:        Edit path to 'Loobos_1997.dat' (included with namelist files)
+initial_conditions.nml:  Edit path to 'initial_conditions.dat' (included with
+                         namelist files)
+
+

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/ancillaries.nml

@@ -0,0 +1,36 @@
+&jules_frac
+file='./JULES/ps41_nml_15min/tile_fractions.dat',
+!!read_from_dump=.false.,
+/
+&jules_soil_props
+const_val=6.63,0.04946,0.004715,0.45815,0.242433,0.136328,1185676.0,
+          0.226873,0.11,
+const_z=.false.,
+!!file='',
+nvars=9,
+!!read_from_dump=.false.,
+!!tpl_name=9*'',
+use_file=9*.false.,
+var='b','sathh','satcon','sm_sat','sm_crit','sm_wilt','hcap',
+    'hcon','albsoil',
+!!var_name=9*'',
+/
+&jules_top
+const_val=1.0,6.0,2.0,
+!!file='',
+nvars=3,
+!!read_from_dump=.false.,
+!!tpl_name='','','',
+use_file=.false.,.false.,.false.,
+var='fexp','ti_mean','ti_sig',
+!!var_name='','','',
+/
+&jules_agric
+!!read_from_dump=.false.,
+!!zero_agric=.true.,
+!!zero_past=.true.,
+/
+&jules_co2
+co2_mmr=5.94100e-4,
+!!read_from_dump=.false.,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/drive.nml

@@ -0,0 +1,19 @@
+&jules_drive
+data_end='1997-12-31 23:00:00',
+data_period=900,
+data_start='1996-12-31 23:00:00',
+file='./JULES/ps41_nml_15min/Loobos_1997.dat'
+interp=8*'nf',
+l_daily_disagg=.false.,
+l_imogen=.false.,
+l_perturb_driving=.false.,
+nvars=8,
+read_list=.false.,
+tpl_name=8*'',
+var='sw_down','lw_down','tot_rain','tot_snow','t','wind',
+'pstar','q',
+var_name='sw_down','lw_down','tot_rain','tot_snow','t','wind',
+'pstar','q',
+z1_tq_vary=.false.,
+z1_tq_in=2.0,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/fire.nml

@@ -0,0 +1,8 @@
+&fire_switches
+!!canadian_flag=.false.,
+!!canadian_hemi_opt=.false.,
+l_fire=.false.,
+!!mcarthur_flag=.false.,
+!!mcarthur_opt=1,
+!!nesterov_flag=.false.,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/initial_conditions.dat

@@ -0,0 +1,3 @@
+# sthuf(1:4)                    t_soil(1:4)                       snow_tile(1:9)
+  0.749  0.743  0.754  0.759    276.78  277.46  278.99  282.48    1.00  1.00  1.00  1.00  1.00  1.00  1.00  1.00  1.00
+

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/initial_conditions.dat.0

@@ -0,0 +1,3 @@
+# sthuf(1:4)                    t_soil(1:4)                       snow_tile(1:9)
+  0.749  0.743  0.754  0.759    276.78  277.46  278.99  282.48    0.0  0.46  0.0  0.0  0.0  0.0  0.0  0.0  0.0
+

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/initial_conditions.nml

@@ -0,0 +1,12 @@
+&jules_initial
+const_val=0.0,276.78,12.1,0.0,50.0,0.759,3.0,0.0,0.0,0.0,
+dump_file=.false.,
+file='./JULES/ps41_nml_15min/initial_conditions.dat',
+nvars=10,
+total_snow=.true.,
+!!tpl_name=10*'',
+use_file=7*.false.,.true.,.true.,.true.,
+var='canopy','tstar_tile','cs','gs','rgrain','sthzw','zw',
+'sthuf','t_soil','snow_tile',
+var_name=10*'',
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_hydrology.nml

@@ -0,0 +1,12 @@
+&jules_hydrology
+l_pdm=.false.,
+!!l_spdmvar=.false.,
+l_top=.true.,
+l_wetland_unfrozen=.false.,
+nfita=30,
+!!s_pdm=0.0,
+!!slope_pdm_max=6.0,
+ti_max=10.0,
+ti_wetl=1.5,
+zw_max=6.0,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_lsm_switch.nml

@@ -0,0 +1,3 @@
+&jules_lsm_switch
+lsm_id=1,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_radiation.nml

@@ -0,0 +1,11 @@
+&jules_radiation
+l_albedo_obs=.false.,
+l_cosz=.true.,
+l_embedded_snow=.false.,
+l_mask_snow_orog=.true.,
+!!l_niso_direct=.false.,
+l_snow_albedo=.true.,
+l_spec_alb_bs=.true.,
+l_spec_albedo=.true.,
+wght_alb=0.0,0.5,0.0,0.5,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_rivers.nml

@@ -0,0 +1,16 @@
+&jules_rivers
+!!a_thresh=1,
+!!cbland=0.1,
+!!cbriver=0.15,
+!!cland=0.2,
+!!criver=0.62,
+!!l_riv_overbank=.false.,
+l_rivers=.false.,
+!!retl=0.0,
+!!retr=0.005,
+!!rivers_meander=1.4,
+!!rivers_speed=0.4,
+!!rivers_timestep=-32768,
+!!rivers_type='rfm',
+!!runoff_factor=1.0,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_snow.nml

@@ -0,0 +1,28 @@
+&jules_snow
+a_snow_et=2.8e-6,
+aicemax=0.78,0.36,
+b_snow_et=0.042,
+c_snow_et=0.046,
+can_clump=1.0,4.0,1.0,1.0,1.0,
+cansnowpft=.false.,.true.,.false.,.false.,.false.,
+dzsnow=0.04,0.12,0.34,
+frac_snow_subl_melt=1,
+graupel_options=0,
+!!! i_basal_melting_opt=0, ! not supported by JULES 5.0 SW 
+i_grain_growth_opt=1,
+i_relayer_opt=1,
+i_snow_cond_parm=1,
+l_et_metamorph=.true.,
+l_snow_infilt=.true.,
+l_snow_nocan_hc=.true.,
+l_snowdep_surf=.true.,
+lai_alb_lim_sn=1.0,1.0,0.1,0.1,0.1,
+n_lai_exposed=1.0,1.0,3.0,3.0,2.0,
+nsmax=3,
+rho_firn_albedo=550.0,
+rho_snow_et_crit=150.0,
+rho_snow_fresh=109.0,
+snow_hcon=0.1495,
+unload_rate_cnst=5*0.0,
+unload_rate_u=0.0,2.31e-06,0.0,0.0,0.0,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_soil.nml

@@ -0,0 +1,18 @@
+&jules_soil
+confrac=0.3,
+!!dzdeep=0.5,
+!!dzsoil_elev=0.,
+dzsoil_io=0.1000,0.2500,0.6500,2.0000,
+!!hcapdeep=2100000.0,
+!!hcondeep=8.6,
+l_bedrock=.false.,
+l_dpsids_dsdz=.true.,
+!l_holdwater=.false.,      !!!! this option is added for jules 5.1, disabled for JULES 5.0 Shugong 
+l_soil_sat_down=.true.,
+l_vg_soil=.true.,
+!!ns_deep=100,
+sm_levels=4,
+soilhc_method=2,
+zsmc=1.0,
+zst=1.0,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_soil_biogeochem.nml

@@ -0,0 +1,22 @@
+&jules_soil_biogeochem
+!!bio_hum_cn=10.0,
+ch4_substrate=1,
+!!! const_ch4_cs=5.41e-12, !not supported by JULES 5.0, SW
+!!! const_ch4_npp=9.99e-3, !not supported by JULES 5.0, SW 
+!!! const_ch4_resps=4.36e-3, !not supported by JULES 5.0, SW 
+!!diff_n_pft=100.0,
+l_ch4_interactive=.false.,
+l_ch4_tlayered=.false.,
+l_layeredc=.false.,
+l_q10=.true.,
+l_soil_resp_lev2=.false.,
+!!n_inorg_turnover=1.0,
+!!! q10_ch4_cs=3.7,       !not supported by JULES 5.0, SW 
+!!! q10_ch4_npp=1.5,      !not supported by JULES 5.0, SW 
+!!! q10_ch4_resps=1.5,    !not supported by JULES 5.0, SW 
+soil_bgc_model=1,
+!!sorp=10.0,
+!!! t0_ch4=273.15,        !not supported by JULES 5.0, SW 
+!!tau_lit=5.0,
+!!tau_resp=2.0,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_soil_ecosse.nml

@@ -0,0 +1,44 @@
+&jules_soil_ecosse
+!!amm_leach_min=0.02,
+!!bacteria_max_frac=0.5,
+!!bacteria_max_frac_ph=5.5,
+!!bacteria_min_frac=0.2,
+!!bacteria_min_frac_ph=4.0,
+!!cn_bacteria=5.5,
+!!cn_fungi=11.5,
+!!decomp_iter_max=10,
+!!decomp_ph_max=4.5,
+!!decomp_ph_min=1.0,
+!!decomp_ph_rate_min=0.2,
+!!decomp_rate=3.22e-7,9.65e-9,2.12e-8,6.43e-10,
+!!decomp_temp_coeff_rothc=47.9 106.0 18.3,
+!!decomp_wrate_min_jules=0.2,
+!!decomp_wrate_min_rothc=0.2,
+!!denit50=0.033,
+!!denit_bio_factor=50.0,
+!!denit_frac_n2_fc=0.55,
+!!denit_nitrate_equal=0.4,
+!!denit_ratio_n2_zero=10.0,
+!!denit_water_coeff=0.62 0.38 1.74,
+!!depo_nit_frac=1.0,
+!!depth_nitrif=0.35,
+!!dim_cslayer=4,
+!!dt_soilc=-1.0,
+!!dz_soilc_io=0.1,0.25,0.65,2.0,
+!!l_decomp_slow=.false.,
+!!l_driver_ave=.true.,
+!!l_match_layers=.false.,
+!!l_soil_n=.true.,
+!!n_inorg_max_conc=0.16,
+!!nitrif_frac_gas=0.02,
+!!nitrif_frac_n2o_fc=0.02,
+!!nitrif_frac_no=0.4,
+!!nitrif_max_factor=0.1,
+!!nitrif_rate=9.921e-7,
+!!nitrif_wrate_min=0.6,
+!!pi_sfc_depth=0.05,
+!!pi_sfc_frac=0.3,
+!!plant_input_profile=1,
+!!temp_modifier=2,
+!!water_modifier=2,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_surface.nml

@@ -0,0 +1,17 @@
+&jules_surface
+all_tiles=0,
+cor_mo_iter=3,
+!!fd_stab_dep=0,
+formdrag=0,
+i_aggregate_opt=1,
+i_modiscopt=0,
+iscrntdiag=0,
+l_aggregate=.true.,
+l_anthrop_heat_src=.false.,
+l_elev_land_ice=.false.,
+l_elev_lw_down=.false.,
+l_epot_corr=.true.,
+l_land_ice_imp=.true.,
+l_point_data=.false.,
+!!orog_drag_param=0.15,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_surface_types.nml

@@ -0,0 +1,10 @@
+&jules_surface_types
+!!elev_ice=0,
+!!elev_rock=0,
+ice=9,
+lake=7,
+nnvg=4,
+npft=5,
+soil=8,
+urban=6,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/jules_vegetation.nml

@@ -0,0 +1,32 @@
+&jules_vegetation
+can_model=3,
+can_rad_mod=4,
+fsmc_shape=0,
+!!ignition_method=1,
+ilayers=10,
+!!irr_crop=1,
+l_bvoc_emis=.false.,
+l_gleaf_fix=.false.,
+l_ht_compete=.false.,
+l_inferno=.false.,
+l_irrig_dmd=.false.,
+!!l_irrig_limit=.false.,
+l_landuse=.false.,
+l_leaf_n_resp_fix=.false.,
+l_nitrogen=.false.,
+l_o3_damage=.false.,
+l_phenol=.false.,
+!!l_prescsow=.false.,
+l_scale_resp_pm=.false.,
+l_stem_resp_fix=.false.,
+l_trait_phys=.false.,
+l_trif_crop=.false.,
+!!l_trif_eq=.false.,
+l_trif_fire=.false.,
+l_triffid=.false.,
+l_use_pft_psi=.false.,
+!!l_veg_compete=.false.,
+l_vegcan_soilfx=.true.,
+!!phenol_period=0,
+!!triffid_period=0,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/model_environment.nml

@@ -0,0 +1,3 @@
+&jules_model_environment
+l_jules_parent=0,
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/model_grid.nml

@@ -0,0 +1,38 @@
+&jules_input_grid
+grid_is_1d=.false.,
+!!npoints=0,
+nx=1,
+ny=1,
+time_dim_name='tstep',
+/
+&jules_latlon
+latitude=52.168,
+longitude=5.744,
+/
+&jules_land_frac
+/
+&jules_model_grid
+force_1d_grid=.false.,
+land_only=.false.,
+!!lat_bounds=0,
+!!latlon_region=.true.,
+!!lon_bounds=0,
+!!npoints=0,
+!!points_file='',
+use_subgrid=.false.,
+/
+&jules_surf_hgt
+!!file='',
+!!l_elev_absolute_height=9*.false.,
+!!surf_hgt_io=9*0.0,
+!!surf_hgt_name='',
+!!use_file=.false.,
+zero_height=.true.,
+/
+&jules_z_land
+!!file='',
+!!surf_hgt_band=9*0.0,
+!!use_file=.false.,
+!!z_land_io=0.0,
+!!z_land_name='',
+/

lis/configs/557WW-7.6-FOC/NRT_STREAMFLOW/JULES/ps41_nml_15min/nveg_params.nml

@@ -0,0 +1,15 @@
+&jules_nvegparm
+albsnc_nvg_io=4.00e-1,8.00e-1,8.00e-1,8.00e-1,
+albsnf_nvg_io=1.80e-1,1.20e-1,-1.00,7.50e-1,
+albsnf_nvgl_io=0.05,0.06,0.03,0.75,
+albsnf_nvgu_io=0.20,0.15,0.80,0.75,
+catch_nvg_io=5.00e-1,0.00,0.00,0.00,
+ch_nvg_io=2.80e+5,2.11000e+7,0.00,0.00,
+emis_nvg_io=9.70e-1,9.85e-1,9.00e-1,9.90e-1,
+gs_nvg_io=0.00,0.00,1.00e-2,1.00e+6,
+infil_nvg_io=1.00e-1,0.00,5.00e-1,0.00,
+vf_nvg_io=1.00,1.00,0.00,0.00,
+z0_nvg_io=1.00,1.00e-4,1.00e-3,5.00e-4,
+z0hm_classic_nvg_io=0.1,0.1,0.1,0.1,
+z0hm_nvg_io=1.00e-7,2.50e-1,2.00e-2,2.00e-1,
+/