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University of Zurich
- https://fabianackle.ch/
- https://orcid.org/0000-0002-7199-5004
- @f_ackle
- @fabianackle.ch
Stars
A comprehensive library for computational molecular biology
Infinite Photorealistic Worlds using Procedural Generation
Blender Addon: Differential Growth
Ultra-fast preprocessing and quality control for long-read sequencing data
Python tool for converting files and office documents to Markdown.
A modular nextflow construct for parallelizing simple FASTQ processing tasks with map/reduce
POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Official repository for the Boltz-1 biomolecular interaction model
Aggregate results from bioinformatics analyses across many samples into a single report.
A Nextflow pipeline for generating consensus sequences from Nanopore reads tagged with UMIs
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
Cagebreak: A Wayland Tiling Compositor Inspired by Ratpoison
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
User friendly and accurate binder design pipeline
A list of interesting genome browser and genome visualization programs
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
DuckDB is an analytical in-process SQL database management system
Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.
Repository to host tool-specific module files for the Nextflow DSL2 community!
A curated collection of Nextflow implementation patterns
A curated list of nextflow based pipelines