Use 'new' 'select/ncpus' format for requesting resources in PBSpro.

fabiogentilini · May 31, 2019 · a685c38 · a685c38
1 parent ec37af0
commit a685c38
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/pipelines/canu/Grid_PBSTorque.pm b/src/pipelines/canu/Grid_PBSTorque.pm
@@ -195,7 +195,8 @@ sub configurePBSTorque () {
     setGlobalIfUndef("gridEngineArrayName",                  "ARRAY_NAME");
     setGlobalIfUndef("gridEngineArrayMaxJobs",               $maxArraySize);
     setGlobalIfUndef("gridEngineOutputOption",               "-o");
-    setGlobalIfUndef("gridEngineResourceOption",             "-l nodes=1:ppn=THREADS:mem=MEMORY");
+    setGlobalIfUndef("gridEngineResourceOption",             "-l nodes=1:ppn=THREADS:mem=MEMORY")      if ($isPro == 0);
+    setGlobalIfUndef("gridEngineResourceOption",             "-l select=1:ncpus=THREADS:mem=MEMORY")   if ($isPro == 1);
     setGlobalIfUndef("gridEngineMemoryPerJob",               "1");
     setGlobalIfUndef("gridEngineNameToJobIDCommand",         "qstat -f |grep -F -B 1 WAIT_TAG | grep Id: | grep -F [] |awk '{print \$NF}'");
     setGlobalIfUndef("gridEngineNameToJobIDCommandNoArray",  "qstat -f |grep -F -B 1 WAIT_TAG | grep Id: |awk '{print \$NF}'");