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Commits on Jun 28, 2019

• Comment removal of fofn files since those are sentinels and removing them too early breaks ovlstore cleanup

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• Add import of paf format, fix paf dump which was missing () for proper operation order, add identity to paf dump

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Commits on Apr 20, 2019

• Increase minimums for GFA memory (issue marbl#1334)

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Commits on Mar 27, 2019

• Update tutorial.rst

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Commits on Mar 15, 2019

• add info on flip-flop

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Commits on Dec 16, 2018

• fix spacing

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• Update faq.rst

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Commits on Oct 26, 2018

• Update faq.rst

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• Merge branch 'master' of github.com:marbl/canu

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• Ignore lines with dashes to avoid warning and dont default to kb for mem units, get them from the lshosts output

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Commits on Oct 25, 2018

• Add step to change OSX binaries to relative paths for release

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• Add utility to make "static" osx binaries

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• Update parameter-reference.rst

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• Update parameter-reference.rst

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• add FAQ addressing broken package managers

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• add info on bubble edges, issue marbl#1116

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Commits on Oct 24, 2018

• more details for trio example

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• update trio assembly paths

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• update trio docs for 1.8

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Commits on Oct 11, 2018

• check for release label

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Commits on Sep 12, 2018

• Merge pull request marbl#1082 from rick-heig/patch-2

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Commits on Sep 10, 2018

• Process the dump inclusively too

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Commits on Sep 6, 2018

• Update faq.rst

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Commits on Aug 30, 2018

• Decrease default nanopore error rate, read quality has improved so this saves runtime

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• Properly fix truncated consensus bug, without introducing lots of indels as the previous fix did

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• Add reverse comp for gap (-) in case someone wants to RC an alignment string

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Commits on Aug 24, 2018

• Update tutorial.rst

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• Update tutorial.rst

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• Update faq.rst

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• Update faq.rst

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Commits on Aug 20, 2018

• Update faq.rst

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Commits on Aug 1, 2018

• Update java options to reduce GC time and threads (issue marbl#993) and memory

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• update call to seq store creation

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• Fix bug which was truncating some large contigs

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Commits on Jul 26, 2018

• Merge pull request marbl#1019 from rick-heig/patch-1

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