Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility

Scripts for analysis used during the course

Pipeline to run structure on multiple values of K, summarize results with CLUMPP, and create barplot in R

Scripts and analysis of C. deneoformans cross between XL280 X 431

Techniques, package recommendations and tricks for data visualization, mostly using ggplot2, and extension packages

convenience functions to help researchers elucidate patterns in their data

Large-scale taxonomic harmonization of plant names by fuzzy matching and synonymy resolution against the Leipzig Plant List as taxonomic backbone. Submission of single names or list of species name…

Code related to 200 Mammals Project

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

Streaming assembly for MinION data

Pipeline to combine SNP datasets from multiple TASSEL-GBS databases

Modified version of Tassel4 (v.4.3.7) for running the Tassel-GBS pipeline modified for polyploid species with high read depths